Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09010 427 / 3e-149 Protein kinase superfamily protein (.1) AT1G16670 355 / 7e-121 Protein kinase superfamily protein (.1) AT1G56145 340 / 4e-108 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56120 337 / 8e-107 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 335 / 3e-106 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 331 / 9e-105 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 325 / 1e-102 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 322 / 8e-102 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 320 / 6e-101 Leucine-rich repeat transmembrane protein kinase (.1) AT3G14840 320 / 8e-101 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G040200 [exp] 661 / 0 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.016G114800 [exp] 434 / 4e-152 AT3G09010 486 / 3e-172 Protein kinase superfamily protein (.1) Potri.011G142100 [exp] 356 / 2e-121 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1) Potri.001G393200 [exp] 357 / 2e-120 AT1G16670 471 / 2e-165 Protein kinase superfamily protein (.1) Potri.001G438400 [exp] 353 / 3e-120 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.011G112000 [exp] 351 / 2e-119 AT1G16670 476 / 2e-168 Protein kinase superfamily protein (.1) Potri.010G221400 [exp] 329 / 5e-111 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.007G067900 [exp] 344 / 1e-109 AT1G56130 1290 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G082900 [exp] 342 / 8e-109 AT1G56140 1097 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018481 [exp] 539 / 0 AT3G09010 414 / 7e-143 Protein kinase superfamily protein (.1) Lus10011193 [exp] 537 / 0 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1) Lus10001212 [exp] 476 / 5e-165 AT3G09010 384 / 2e-128 Protein kinase superfamily protein (.1) Lus10004825 [exp] 428 / 1e-149 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1) Lus10002494 [exp] 395 / 2e-136 AT3G09010 462 / 3e-162 Protein kinase superfamily protein (.1) Lus10042460 [exp] 370 / 4e-127 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10026207 [exp] 367 / 2e-125 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10042851 [exp] 351 / 5e-119 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1) Lus10028149 [exp] 347 / 8e-118 AT1G16670 434 / 6e-152 Protein kinase superfamily protein (.1) Lus10005856 [exp] 331 / 1e-109 AT3G09010 279 / 6e-89 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.011G049600.4 pacid=42781412 polypeptide=Potri.011G049600.4.p locus=Potri.011G049600 ID=Potri.011G049600.4.v4.1 annot-version=v4.1 ATGAGGTGTAGCTGTTTTGGAGGACCAAGGGTAGATAGAAAAAAAGGGCCTGCTGCTGGGACTCTTCATGGTATAAATGGTGATTTGCTTATTCAGGATA TTAATCATTTGTCCTACAAGGAATTAAGATCAGCAACAGATAACTTCCATACAAGCAATAAGATAGGACGAGGAGGTTTTGGTACTGTCTACAAGGGAAC CCTCAAAAGTGGAACACAAGTTGCTGTGAAGACACTTTCTGCTCAATCAAATCAAGGCGTGCAGGAATTTTTGAATGAAATCAAAACTATATCAAAAGTT AAGCATCCAAATCTTGTTGAGTTGATAGGGTGCTGTGCTCAAGGATCTAATCGGATTCTAGTGTATGAATATGTAGAAAATAACAGCCTTGATCGTGCAT TGTTAGGTTCAAGGAGTACAGATATTAAACTAGACTGGGGAAGAAGATCTGCTATTTGCTTGGGTATTGCTAGGGGTCTTGATTTCCTTCACAAAGAAGT GGTTCCACATATTGTGCATAGAGACATCAAAGCTAGCAATATACTCCTTGACAAAGACTTCAACCCAAAAATTGGAGACTTTGGGTTGGCTAAACTGTTC CCAGATAATATCACCCATATTAGCACAAGAATTGCTGGAACAACTGGTTATTTGGCACCAGAATATGCATTGGGTGGTCAGTTAACAATGAAGGCTGATG TATACAGCTTTGGGGTCCTTATCCTTGAAATAGTTAGTGGCAGAAGTAGTGCAAAGCCAAGCTGGGGAGGGACGCAGAAGTTACTCTTAGAATGGGCGTG GCAGCTTCACGAAGAAGGGAAACACTTGGAACTTGTGGATCCAGAGATGGGAGAGTTTCCCGAGGAGGAAGTCATTAGGTACATAAAAGTAGCTTTTTTC TGCACCCAATCAGCGGCAAACCGAAGGCCAATCATGACCCAGGTAGTTGACATGCTCTCGAGGCAAATCCAGCTAAATGACAAGGAACTAACTGCTCCAG GTTTCTTCCAAGATTCAGACAGTCCCAGTGGGGGGCCTTCTTCCATGAAAGGATCTTATGCCGACTCTACTTGCTTCCAGATGAGCTCAGTTCCAGTTAG AATCACTGAGGTGACCCCCAGATGA
AA sequence Show only first row Show all	>Potri.011G049600.4 pacid=42781412 polypeptide=Potri.011G049600.4.p locus=Potri.011G049600 ID=Potri.011G049600.4.v4.1 annot-version=v4.1 MRCSCFGGPRVDRKKGPAAGTLHGINGDLLIQDINHLSYKELRSATDNFHTSNKIGRGGFGTVYKGTLKSGTQVAVKTLSAQSNQGVQEFLNEIKTISKV KHPNLVELIGCCAQGSNRILVYEYVENNSLDRALLGSRSTDIKLDWGRRSAICLGIARGLDFLHKEVVPHIVHRDIKASNILLDKDFNPKIGDFGLAKLF PDNITHISTRIAGTTGYLAPEYALGGQLTMKADVYSFGVLILEIVSGRSSAKPSWGGTQKLLLEWAWQLHEEGKHLELVDPEMGEFPEEEVIRYIKVAFF CTQSAANRRPIMTQVVDMLSRQIQLNDKELTAPGFFQDSDSPSGGPSSMKGSYADSTCFQMSSVPVRITEVTPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09010			Protein kinase superfamily pro...		Potri.011G049600 [exp]	0	1
AT1G19010			unknown protein		Potri.001G350000 [exp]	7.68	0.7774
AT5G36930			Disease resistance protein (TI...		Potri.019G001600 [exp]	17.14	0.7549
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170232 [exp]	22.09	0.7480
AT3G13682		LDL2	LSD1-like2 (.1)		Potri.011G127600 [exp]	29.91	0.7420
AT4G17940			Tetratricopeptide repeat (TPR)...		Potri.001G140500 [exp]	30.00	0.6909
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Potri.008G101300 [exp]	44.00	0.7058
AT5G53020			Ribonuclease P protein subunit...		Potri.015G012000 [exp]	44.49	0.7096
AT4G03250	HD		Homeodomain-like superfamily p...		Potri.009G071700 [exp]	54.11	0.7017
AT5G53620			unknown protein		Potri.012G023200 [exp]	56.22	0.6926
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.005G083400 [exp]	65.89	0.6940

Compare expression of checked genes

Potri.011G049600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.