Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04920 1791 / 0 AtSFR6, SFR6 sensitive to freezing 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G040300 [exp] 2122 / 0 AT4G04920 1813 / 0.0 sensitive to freezing 6 (.1.2) Potri.004G040400 [exp] 2096 / 0 AT4G04920 1764 / 0.0 sensitive to freezing 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011192 [exp] 1991 / 0 AT4G04920 1903 / 0.0 sensitive to freezing 6 (.1.2) Lus10018482 [exp] 858 / 0 AT4G04920 831 / 0.0 sensitive to freezing 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G049700.2 pacid=42781162 polypeptide=Potri.011G049700.2.p locus=Potri.011G049700 ID=Potri.011G049700.2.v4.1 annot-version=v4.1 ATGACTTCTTCTTCTTCTAACAAGGAGACAACGGAGGAGGAGCAGACTGCGCCGGAGATTTCGCCTGCCGAAGGTGGTGGAGGTGCTAGTAGTGGAGGAG TGGGGAAGGCTGATCCTGTCAGTAGTGGTGGTGAGGAAGAGAGTGGTGGTGCTGGTGAGAAAGTCGACGATCCAATGGAGGAGGACTCAGTGAGTCCAGC TACTGTGTTTTGTATTAGGCTGAAACAGCCACGGTCTAATTTGCAGCATAAAATGAGTGTGCCTGAGCTTTGTCGCCAATTTAGTGCTGTTGCTTGGTGT GGCAAGTTGAATGCTATAGCTTGTGCATCAGAAACTTGTGCTAGAATTCCAAGCTCCAACGCAAACCCACCGTTCTGGATCCCCATTCATGTTGTTATCC CTGAGAGACCAACTGAATGTGCTGTTTTCAATGTCATAGCAGATTCTCCTCGTGATTCTGTTCAGTTTATTGAATGGTCCCCTACTTCTTACTCTCGTGC ATTATTAATTGCTAATTTCCATGGAAGGACAACTATCTGGACTCAGCCTTCTCAAGGTCCATCTAATTTGGTACGTGATGCTAGCTGTTGGCAGCGTGAG CATGAATGGCGGCAGGATATCGCAGTTGTTACTAAATGGCTATCCAGTGTCTCTCCATACAGGTGGCTTTCGTCAAAGTCTAGTACTCCCACAAGCTCAA AGTCAGCTTTTGAGGAAAAATTTCTTTCACAGCATTCTCAAACTTCAGCTCGATGGCCAAATTTCCTTTGTGTTTGCTCTGTTTTCTCATCGGGTTCTGT TCAACTTCATTGGTCCCCTAGCCAGAATAATACATCACCAAAGTGGTTTTGCACGAGCAAAGGACTCTTGGGTGCTGGCCCTAGTGGGATTATGGCTGCT GATGCTATTATAACAGACAGTGGCGCAATGCATGTTGCAGGTGTTCCAATTGTCAATCCTTCAACTGTTGTTGTTTGGGAGGTTACTCCTGGCCCTGGAA ATGGATTTCAAGCAACTCCAATGGCAAGTGTTGGCAATGGGGTCCCACCTTCAGTTAAGCCACCCAATTGGTCAGGTTTTGCTCCTCTGGCTGCATATTT ATTCAACTGGCAAGAGCATCTGATGTCTGAAGTAAAGCAAGGGAAAAAGCAGACGGATGAAGATTTCACAGACACCATCACACTTCATTGTTCACCAGTT TCAAATTTTTCTGCATATGTGAGTCCTGAGGCCGCAGCTCAATCTGCAGCAACTACTACTTGGGGTTCTGGAGTCAGTGCTGTTGCTTTTGATCCAACTC GTGGTGGCTCCGTGATTGCAGTTGTTATAGTTGAGGGACAGTATATGTCCCCTTATGATCCAGATGAGGGTCCTTTAATCACAGGATGGAGGGTGCAACG CTGGGAATCATCTGTTCAACCTGTAGTTCTTCATCCAATATTTGGAAATCCAACTTCTGGTTTTGGTGGGCAGGCACCCATGCAAACTGTATGGGTGTCC AAAGTGGATACAAGCATACCTCCAACAAATGATTTCAAAAATTACCAACCAGCTGCTGCAGGACCAATCTCTGATGTAAGAAAGACATCTGATTCTGGTG CTGAGAAGACAAAGAGAGTCATCTTTGATCCCTCTGATCTGCCCAGTGATGTTAGAACACTTGCTCGAATTGTTTATTCTGCTCATGGTGGTGAGATTGC TGTTGCTTTTCTTGGGGGTGGAGTTCACATTTTCTCTGGGACAAACTTCACATTAGTTGACAACCACCAGATTAATGTTGGATCTACAATTGCTGCTCCT GCCTTCTCTTCCACAAGCTGCTGCTCAGCTTCAGTTTGGCACGACACTAGTAAGGATCACACTGTATTGAAGATAATTCGTGTTCTTCCTCCTGCTGTTC CAAGCAGTCAGGTGAAGGCTAACTCAGCAATCTGGGAACGTGCTATTGCTGAGAGGTTTTGGTGGAGCCTTTTGGTTGGAGTTGATTGGTGGGATGCTGT TGGCTGTACACAGAGCGCCGCTGAGGATGGCATTGTTTCACTTAACAGTGTGATTGCTGTCTTGGATGCGGATTTTCATTCTCTTCCCACTTCACAGCAC AGACAGCAGTATGGTCCTAGTCTGGACAGAATAAAATGTAGACTGCTGGAAGGTACAAATGCTCAGGAGGTTAGGGCAATGGTTCTTGACATGCAAGCTA GGTTGCTGCTTGATATGTTGGGCAGAGGCATTGAGTCAGCGTTGATAAATCCTTCAGCATTAGTATCTGAACCATGGCAGGCTTCTGGTGAGACATTATC TGGCATCGACCCCGAAGCAATGACAGTTGAGCCAAACCTTGTTCCGAGTATTCAGGCTTATGTTGATGCAGTTCTTGATCTAGCTTCACATTTTATCACA CGTCTACGGCGTTATGCAAGTTTCTGTCGCACACTGGCTAGTCATGCTGTTACAGCAGGCACAGGCAGTAACCGCAATATGGTGACTAGTCCTACTCAAA GTTCAGCATCTCCTGCGCCAAGTCAGGGCGGTCAAAGTGGCTCTACAAGTTCCACTGGAAGCACTCAGATGCAAGCTTGGGTTCAAGGTGCCATTGCTAA GATTAGTAGCACGACTGATGGAGTGACCGGTTCAACTCCGAATCCCATAAGTGGTCCATCTTCCGTTATGCCGATAAGCATTAACACTGGAACTTTTCCT GGAACACCAGCAGTTAGGCTCATTGGTGACTGCCATTTCCTCCGCAGATTATGCCAGCTCCTGCTTTTCTGTTTTTTCTTTCGCCGAACTCAACTACCTC GCTTTGCCGGAAGTGCACAGAGAAATTCAACTGATACAAATGTGCAAAAACCTCAGTCTGGTGCTCCTGGCAAAGTGGAGGAGATCAACACTGTTACTTC AAAGCCAGCACCAGCTATGGTCAGGTCGGATGAAGGTCAGACAGCTCGAGGTGGTCAAGTAATGCCTGGAGCTAAACCAGTCGAAGATGGACCTGCTGGT AGGCACAGAGTAGGCAGTGGCAATGCCGGCCAAGGATACAGTTTTGAAGAGGTGAAGGTCCTTTTCCGCATTCTCATGGATCTTTGTCGGCGAACAGCAA CTCTGGCACACCCATTGCCAGTTTCTCAAGTAGGAAGCAGCAATATCCAGGTGCGGTTGCATTATATTGATGGCAATTATACAGTATTGCCAGAGGTTGT AGAAGCATCTCTTGGCCCACATATGCAGAACATGCCACGGCCTAGAGGTGCAGATGCTGCTGGTCTGTTACTACGAGAGTTAGAACTCCACCCTCCATCT GAAGAGTGGCACAGGCGCAATATGTTTGGTGGACCCTGGTCTGATGCTGAGGATATGGGTTCAGATGATACTCTGAAGCTTAACTCAGATCCACTTGATT TCAGCTCACTCGAAAACTGTGATGTTTATTACAGTGCTCATGGCTTATGGCCAAGGAAGCGCAGACTGTCTGAAAGAGATGCAGCTTTTGGCTTGAACAC TTCTGTTGGCCTGGGAGCTTATCTTGGCATAATGGGATCTCGAAGAGATGTTGTTACTGCGATGTGGAAGACTGGTCTTGAAGGTGTTTGGTACAAGTGT ATAAGATGTTTGCGGCAGACTTCAGCATTTGCTTCCACAGGTGCTGCGGCAAACCCACCTAACCAAAATGAAAGAGAGGCTTGGTGGATCAGCCGTTGGG CTTACGGCTGTCCGATGTGTGGGGGTACATGGGTTCGAGTTGTATAG
AA sequence Show only first row Show all	>Potri.011G049700.2 pacid=42781162 polypeptide=Potri.011G049700.2.p locus=Potri.011G049700 ID=Potri.011G049700.2.v4.1 annot-version=v4.1 MTSSSSNKETTEEEQTAPEISPAEGGGGASSGGVGKADPVSSGGEEESGGAGEKVDDPMEEDSVSPATVFCIRLKQPRSNLQHKMSVPELCRQFSAVAWC GKLNAIACASETCARIPSSNANPPFWIPIHVVIPERPTECAVFNVIADSPRDSVQFIEWSPTSYSRALLIANFHGRTTIWTQPSQGPSNLVRDASCWQRE HEWRQDIAVVTKWLSSVSPYRWLSSKSSTPTSSKSAFEEKFLSQHSQTSARWPNFLCVCSVFSSGSVQLHWSPSQNNTSPKWFCTSKGLLGAGPSGIMAA DAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPMASVGNGVPPSVKPPNWSGFAPLAAYLFNWQEHLMSEVKQGKKQTDEDFTDTITLHCSPV SNFSAYVSPEAAAQSAATTTWGSGVSAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPLITGWRVQRWESSVQPVVLHPIFGNPTSGFGGQAPMQTVWVS KVDTSIPPTNDFKNYQPAAAGPISDVRKTSDSGAEKTKRVIFDPSDLPSDVRTLARIVYSAHGGEIAVAFLGGGVHIFSGTNFTLVDNHQINVGSTIAAP AFSSTSCCSASVWHDTSKDHTVLKIIRVLPPAVPSSQVKANSAIWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPTSQH RQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGRGIESALINPSALVSEPWQASGETLSGIDPEAMTVEPNLVPSIQAYVDAVLDLASHFIT RLRRYASFCRTLASHAVTAGTGSNRNMVTSPTQSSASPAPSQGGQSGSTSSTGSTQMQAWVQGAIAKISSTTDGVTGSTPNPISGPSSVMPISINTGTFP GTPAVRLIGDCHFLRRLCQLLLFCFFFRRTQLPRFAGSAQRNSTDTNVQKPQSGAPGKVEEINTVTSKPAPAMVRSDEGQTARGGQVMPGAKPVEDGPAG RHRVGSGNAGQGYSFEEVKVLFRILMDLCRRTATLAHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPS EEWHRRNMFGGPWSDAEDMGSDDTLKLNSDPLDFSSLENCDVYYSAHGLWPRKRRLSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAMWKTGLEGVWYKC IRCLRQTSAFASTGAAANPPNQNEREAWWISRWAYGCPMCGGTWVRVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Potri.011G049700 [exp]	0	1
AT1G28320		DEG15	protease-related (.1)		Potri.004G046900 [exp]	1.00	0.8745
					Potri.009G005300 [exp]	4.00	0.8296
AT1G02080			transcription regulators (.1.2...		Potri.002G143000 [exp]	4.47	0.8607
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.009G102900 [exp]	5.74	0.8588
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Potri.013G068400 [exp]	6.92	0.8579
AT3G56320			PAP/OAS1 substrate-binding dom...		Potri.019G056800 [exp]	7.07	0.8342
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Potri.015G050800 [exp]	8.12	0.8387
AT5G58410			HEAT/U-box domain-containing p...		Potri.019G126000 [exp]	8.66	0.8397
AT3G61690			nucleotidyltransferases (.1)		Potri.014G097600 [exp]	8.71	0.8259
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.001G102900 [exp]	9.79	0.8340

Compare expression of checked genes

Potri.011G049700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.