Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53750 261 / 1e-83 CBS domain-containing protein (.1) AT4G27460 251 / 5e-80 Cystathionine beta-synthase (CBS) family protein (.1) AT1G65320 85 / 8e-18 Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G041000 [exp] 604 / 0 AT5G53750 295 / 6e-97 CBS domain-containing protein (.1) Potri.001G402900 [exp] 361 / 9e-123 AT5G53750 372 / 7e-127 CBS domain-containing protein (.1) Potri.011G122000 [exp] 347 / 6e-117 AT5G53750 355 / 6e-120 CBS domain-containing protein (.1) Potri.019G052650 [exp] 95 / 3e-21 AT1G65320 516 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1) Potri.013G087100 [exp] 79 / 6e-16 AT1G65320 521 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025651 [exp] 430 / 5e-150 AT4G27460 301 / 2e-99 Cystathionine beta-synthase (CBS) family protein (.1) Lus10018183 [exp] 426 / 1e-148 AT4G27460 298 / 3e-98 Cystathionine beta-synthase (CBS) family protein (.1) Lus10029665 [exp] 390 / 2e-134 AT5G53750 283 / 2e-92 CBS domain-containing protein (.1) Lus10042702 [exp] 385 / 1e-132 AT5G53750 278 / 3e-90 CBS domain-containing protein (.1) Lus10011457 [exp] 108 / 7e-26 AT1G65320 485 / 2e-171 Cystathionine beta-synthase (CBS) family protein (.1) Lus10037535 [exp] 102 / 8e-24 AT1G65320 483 / 2e-170 Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G050500.1 pacid=42782146 polypeptide=Potri.011G050500.1.p locus=Potri.011G050500 ID=Potri.011G050500.1.v4.1 annot-version=v4.1 ATGGCAGTCAGTATCTTATCTAATGAGGTATCTGACCTGTGTCTTGGAAAACCTGCGTTGAGCTCTCTGTCAGCTTCTGCAACCGTCGGTGACGCGTTGT CTGCTCTCAAAAGATCTGGTGATTTGTTCTTAAGCGTTTGGAGCTGTGATCACCTTCACCATTGCAACTCTCCAATATCGATCCAGGTTGACTTTGAAGA ATGTAAATGCGTTGGCAAGGTTTGCTTGGTGGATGTGATTTGCTTCTTGTCTGTAGAAGAGAATTTGAAGAATCCGGGAAAAGCCCTTCAAGAACCGGTC TCTGTGCTTTTAAATTCTAAGGTTCCTGGACTTGTTAGGCACCTGGAACCGCATGCCAGCCTGTTGGAGGCCATAGATGCCATCCTTGGAGGGGCACTGA ACCTTGTGATACCACTTCGCAACCCATTCACAAGAAAGAAGCTGGTATACAAATCCGCAGCCAACTCCACCCTCCACAACAACCGTGAGTACTGCTGGCT GGCTCAGGAAGACATAATCCGTTACCTCCTCAACTCCATTGGCCTCTTCTCTCCAACTCCAAACCACACCATCGAGTCTCTCGGCCTCATTTACTCTGAA TCCTTCTTTACTGTCCATTATGATGACCCTGCCTCCTCTGCATTGCCCTTGATCTCTCAGTCCCTCATTAAACAAACATCTGTAGCCATTCTTGATACAG ATGGTAAGTTGATTGGCGAAATCTCACCATTCACATTGAACTTTTGTGACGAGACTGTGGCAGCTGCAATCGCAACACTCTCTGCTGGGGAGTTGATGGC TTACATAGACTGCCGTGACCCACCAGAGGACCTGTTAAGGTTGGTGAAGGAAAGACTGGAAGAGAGGAATCTAGGACCTGCTTTGGACTTGATAGAAGAG GAATCAGGAATTTCATCATTGTCATCGTATTCATCTTCATCAGATGAAGAGTTTGGAATGGGAAGGAGTGGGGGGGTGTCTGGGCATTCAGCAGGGGTGA GGGGTACCGCCCAGACAACCGTGTGCTATCCATGGAGCTCGTTGGTGGCAGTGATGATTCAGGCTCTTTCACATCGTGTAAGCTGCACATGGGTTATCGA AGAGGATGGCACTTTGCTTGGTGTTGTCACCTTCGCAGGAATGATTAAAGTGTTGCGGGAACGTTTGAAATCAATGGCGTGA
AA sequence Show only first row Show all	>Potri.011G050500.1 pacid=42782146 polypeptide=Potri.011G050500.1.p locus=Potri.011G050500 ID=Potri.011G050500.1.v4.1 annot-version=v4.1 MAVSILSNEVSDLCLGKPALSSLSASATVGDALSALKRSGDLFLSVWSCDHLHHCNSPISIQVDFEECKCVGKVCLVDVICFLSVEENLKNPGKALQEPV SVLLNSKVPGLVRHLEPHASLLEAIDAILGGALNLVIPLRNPFTRKKLVYKSAANSTLHNNREYCWLAQEDIIRYLLNSIGLFSPTPNHTIESLGLIYSE SFFTVHYDDPASSALPLISQSLIKQTSVAILDTDGKLIGEISPFTLNFCDETVAAAIATLSAGELMAYIDCRDPPEDLLRLVKERLEERNLGPALDLIEE ESGISSLSSYSSSSDEEFGMGRSGGVSGHSAGVRGTAQTTVCYPWSSLVAVMIQALSHRVSCTWVIEEDGTLLGVVTFAGMIKVLRERLKSMA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53750			CBS domain-containing protein ...		Potri.011G050500 [exp]	0	1
AT5G49810		MMT	methionine S-methyltransferase...		Potri.004G229800 [exp]	4.89	0.6047	Pt-MMT.1,MMT
AT5G65650			Protein of unknown function (D...		Potri.007G027700 [exp]	12.36	0.5939
AT5G14120			Major facilitator superfamily ...		Potri.012G098900 [exp]	20.07	0.5724
AT5G25770			alpha/beta-Hydrolases superfam...		Potri.006G240600 [exp]	24.49	0.5985
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Potri.010G038400 [exp]	30.85	0.5545	ALPHA.8
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Potri.009G037700 [exp]	37.14	0.5314	Pt-TOPP1.1
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Potri.004G155600 [exp]	47.32	0.5363
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Potri.009G029600 [exp]	55.37	0.5625
AT1G47990		ATGA2OX4	Arabidopsis thaliana gibberell...		Potri.010G149700 [exp]	77.42	0.5562	GA2ox5,Pt-GA2.3
AT5G05480			Peptide-N4-(N-acetyl-beta-gluc...		Potri.010G185100 [exp]	80.49	0.5453

Compare expression of checked genes

Potri.011G050500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.