Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41950 51 / 3e-06 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G146200 [exp] 49 / 9e-06 AT5G41950 683 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025650 [exp] 502 / 6e-169 AT5G41950 47 / 3e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018184 [exp] 478 / 9e-160 AT5G41950 47 / 4e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001675 [exp] 53 / 8e-07 AT5G41950 676 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017329 [exp] 52 / 1e-06 AT5G41950 620 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G050600.1 pacid=42780729 polypeptide=Potri.011G050600.1.p locus=Potri.011G050600 ID=Potri.011G050600.1.v4.1 annot-version=v4.1 ATGAAAACCCTAATTTTTATAAACCCAATTAATTGCGCAGCTCCACAATCCCCTCCTTCAATTTTCCTCTTTCATTTTCATTCACTTTCTCGAGAAAATA AAAAATCCCTCCTTCGCATTTCCCATACAAAAAACCCTCTCTTTACTCACAAACCCCGACATTTCTCTCCAATCAAAGCATCTGCTTCAGACACTTATAA TGGCTGGCACGACTTGGGACTCATTGGTGGTGACTCAGTCAACTCGGGTGAGTCAACCCAGTTGAGGAATTTTCTAGTTTCTATAGGAATCGACGATAAA AAACATGTCTTTATGTTTATATTGGGTATTTTTTGTGCCCTTGCAATTTCTAGGGTAAGGGTTTCTTCAATTGTAGTGTTTCCAGCTTCTGTTTTGGTTT TTGCTGTTGGGTTTTCCTTTGGGTTTGTACGTGGGGGGAGTTTTAATGAGTTTAATGTGAATGGAATTAAGAGAAAAGCTAAAGAGGAGTTTTTTAGGGT TTATAGTGAGAGGTTAAGGAGTTTAGTGGGTTTTTTTGATGGTTTTGATGTTAAAGCTAGTGACTTGAAGAATGATATACAGAGAGCTATTGATTCTAAA GAAATTAAATTGGGTGATTTGGAGAATTATGTTAATGTGATTCAATCGATAAAGGCTTCGGCTTTGAATGCGAGAAATATTGTCCAGGCAAATATCGTTA ATTCAGGAAATGTTAATGGTGTGTTAGTTGAGAATCAGAAATCATCTTCAAGTATGAAAGGTAAGGAGATTGGTGAAGTTGGGTTTGAGTTTTTACAATT TGTTGGGGGTTTGTTTGGAGAGAAAGCGGTTAGTTCAAAGAGTAATAAAGTGAAGGAGAAAGAGAAAGAGATTGCTAAGCAGGGGACTGCGAAGGGTGTG GAAAATGATCGAGCTCAAGGAAATAACTCGACGCCAGTTGTTGAAGAAGAGGTTCTTAATGCTGTTGATAATGAGAAAGCGAATAGGGATTTCCTGTTTT CTCAAGGTTCAATGAATAAGTCTGCTTTGAATTTGGATAGTCAAAGGACTAGAATTGTTTCAGAAAATGGAAAGATGAATTTGGGGGATGTAGGTGGGGA TAGAAAAAGACTTGTTAATAATGAAGAGTATCGTTACCAAAATAACAGGTTGCAGTTCATGGGTAATCATGGTGTTTATTGGAAGATGGATCAAAATAAT GAAACTGAAACATGGAAATCCCAGGATAATCTATTTGATTCTGTGGATTTTGGTGTCAGTTTAGAACAAATGGAAACAGAAACTAACTTCGTACAAAAGC AGATGTACAGGAAATCCTCCAGAGCTTACAGATCCTCACACACCTGGAAGATGAGTGAAGATGAGAGTTACAGGTCTCAACTCAAAGAAGGGTGGGTGGA TGATGATTTGCATTTAGGTGATCACCAGTCAGTACCTGATAGTGAAGTTGTTTCGTCTTCTTCTTCTTCAGTGGTTTCAGATGACGTGGTGTTTGATAGG CACCTTACAGAAGCTAACAACCTTCTGAAACAAGCCAAGGAGTTTCTAAGGGGAAGGAGTGATGAAGAGCATGTAGAAATTATTTTGCACAAGTCTGCGA AGTTACTTTCCAAAGCCATAGCCATGAAGCCCATGAGTCTGTTGGCTGTCGGCCAATTGGGCAATACATATCTTCTTCATGGAGAACTAAAATTAAAGAT TAGTCGCGAGCTGCGAACTCTCCTCTCAAGAAGGGATCCGTTTTATGCAAATGATCATGGTGGAATGCTCAAAGGTCTAGATGATCAGGTAATAAAGAAA GATAAAATAGCATCTGTACTTGTAAATGTGTGTGAAGAGTGTGAAGAACTCCTAGTTGAAGCGGGCAGAAAATATAGGCTGGCATTATCGATTGATGGGA ATGATGTGAGAGCCTTGTACAATTGGGGCCTTGCCCTCTCCTTTCGTGCTCAGTTGATTGCAGATATTGGACCAGAAGCTGCTTATGATGCTGAAAAGGT GTTCTTGGCTGCAATTGACAAATTTGATGCCATGATGTCCAAAGGCAATGTCTACGCACCAGATGCCTTGTATAGATGGGGTGTGGTATTGCAGCAGAGA TCCCGTTTACGGCCAACTAATAGTAGAGAGAAAGTGAAGTTGCTGCAGCAAGCAAGGAGGCTCTATGAAGATGCTCTTCATATGGACTCTAACAATCTTC AAGTAAGAGAAGCCTTATTATCATGTACGTCTGAGCTCAATCATAGGCTATTGTAA
AA sequence Show only first row Show all	>Potri.011G050600.1 pacid=42780729 polypeptide=Potri.011G050600.1.p locus=Potri.011G050600 ID=Potri.011G050600.1.v4.1 annot-version=v4.1 MKTLIFINPINCAAPQSPPSIFLFHFHSLSRENKKSLLRISHTKNPLFTHKPRHFSPIKASASDTYNGWHDLGLIGGDSVNSGESTQLRNFLVSIGIDDK KHVFMFILGIFCALAISRVRVSSIVVFPASVLVFAVGFSFGFVRGGSFNEFNVNGIKRKAKEEFFRVYSERLRSLVGFFDGFDVKASDLKNDIQRAIDSK EIKLGDLENYVNVIQSIKASALNARNIVQANIVNSGNVNGVLVENQKSSSSMKGKEIGEVGFEFLQFVGGLFGEKAVSSKSNKVKEKEKEIAKQGTAKGV ENDRAQGNNSTPVVEEEVLNAVDNEKANRDFLFSQGSMNKSALNLDSQRTRIVSENGKMNLGDVGGDRKRLVNNEEYRYQNNRLQFMGNHGVYWKMDQNN ETETWKSQDNLFDSVDFGVSLEQMETETNFVQKQMYRKSSRAYRSSHTWKMSEDESYRSQLKEGWVDDDLHLGDHQSVPDSEVVSSSSSSVVSDDVVFDR HLTEANNLLKQAKEFLRGRSDEEHVEIILHKSAKLLSKAIAMKPMSLLAVGQLGNTYLLHGELKLKISRELRTLLSRRDPFYANDHGGMLKGLDDQVIKK DKIASVLVNVCEECEELLVEAGRKYRLALSIDGNDVRALYNWGLALSFRAQLIADIGPEAAYDAEKVFLAAIDKFDAMMSKGNVYAPDALYRWGVVLQQR SRLRPTNSREKVKLLQQARRLYEDALHMDSNNLQVREALLSCTSELNHRLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41950			Tetratricopeptide repeat (TPR)...		Potri.011G050600 [exp]	0	1
AT1G61040		VIP5	vernalization independence 5, ...		Potri.004G039500 [exp]	1.73	0.8761
AT5G56210		WIP2	WPP domain interacting protein...		Potri.011G169000 [exp]	8.66	0.8155
AT3G06250	FAR1_related	FRS7	FAR1-related sequence 7 (.1)		Potri.005G023700 [exp]	10.19	0.8090
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.011G089901 [exp]	11.13	0.8343
AT5G05230			RING/U-box superfamily protein...		Potri.019G058300 [exp]	11.40	0.7907
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Potri.019G029500 [exp]	12.00	0.7799
AT3G60850			unknown protein		Potri.014G070200 [exp]	20.34	0.8077
AT3G57990			unknown protein		Potri.006G191800 [exp]	22.13	0.8081
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.018G028200 [exp]	22.58	0.7558
AT3G09030			BTB/POZ domain-containing prot...		Potri.016G112900 [exp]	22.73	0.7577

Compare expression of checked genes

Potri.011G050600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.