Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20740 223 / 5e-74 Tetraspanin family protein (.1.2.3) AT2G20230 99 / 3e-25 Tetraspanin family protein (.1) AT4G28770 91 / 9e-22 Tetraspanin family protein (.1.2) AT1G32400 76 / 1e-16 TOM2A tobamovirus multiplication 2A (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G041500 [exp] 307 / 2e-107 AT2G20740 226 / 3e-75 Tetraspanin family protein (.1.2.3) Potri.013G134200 [exp] 179 / 8e-57 AT2G20740 239 / 2e-80 Tetraspanin family protein (.1.2.3) Potri.019G101800 [exp] 164 / 7e-51 AT2G20740 238 / 1e-79 Tetraspanin family protein (.1.2.3) Potri.002G253500 [exp] 92 / 2e-22 AT2G20230 255 / 5e-85 Tetraspanin family protein (.1) Potri.001G146100 [exp] 90 / 1e-21 AT1G32400 329 / 8e-114 tobamovirus multiplication 2A (.1.2.3) Potri.003G087800 [exp] 88 / 7e-21 AT1G32400 319 / 7e-110 tobamovirus multiplication 2A (.1.2.3) Potri.006G241400 [exp] 76 / 2e-16 AT2G20740 108 / 1e-28 Tetraspanin family protein (.1.2.3) Potri.018G038400 [exp] 67 / 3e-13 AT2G20740 109 / 4e-29 Tetraspanin family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039817 [exp] 192 / 3e-61 AT2G20740 266 / 3e-90 Tetraspanin family protein (.1.2.3) Lus10018584 [exp] 182 / 1e-57 AT2G20740 243 / 8e-82 Tetraspanin family protein (.1.2.3) Lus10022841 [exp] 103 / 9e-27 AT2G20230 294 / 2e-100 Tetraspanin family protein (.1) Lus10011910 [exp] 102 / 2e-26 AT2G20230 281 / 2e-95 Tetraspanin family protein (.1) Lus10030939 [exp] 97 / 3e-24 AT1G32400 364 / 1e-127 tobamovirus multiplication 2A (.1.2.3) Lus10011042 [exp] 91 / 9e-22 AT1G32400 378 / 4e-133 tobamovirus multiplication 2A (.1.2.3) Lus10003011 [exp] 87 / 8e-21 AT1G32400 311 / 2e-107 tobamovirus multiplication 2A (.1.2.3) Lus10040108 [exp] 58 / 3e-10 AT1G32400 240 / 3e-80 tobamovirus multiplication 2A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [poplar] [flax] Tetraspannin PF00335 [poplar] [flax] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Potri.011G050900.5 pacid=42781041 polypeptide=Potri.011G050900.5.p locus=Potri.011G050900 ID=Potri.011G050900.5.v4.1 annot-version=v4.1 ATGGCAAGAGTTGCAAGGACTTGTCTGCGGTCAATATTGAAAATTGTGAATTCGACTTTGGGACTTGTTGGCATAGCAATGATTCTCTATGGTTTTTGGA TGCTTAGAGTATTGCAGAGAGACATGGAAAGTCCATCTTTTGATGATTTTGATTCTACTGCCCTATGGTTCATATATACTTTTCTCAGCATTGGTGTTGC CTTGTGCCTAATTACATGCCTAGGCCATATCTCTGCAGATAGCTCAAATGGGATTTGCCTTTCTTGTTACATGGTGATTATCTTCTTACTTCTCTTACTG GAGACATTAGTTGCAGCAGATATACTCCTAAATTCAGACTGGGAGAAGGATTTACCTGAGGATCCGACAGGGAGGTTCCATGATTTCAGAGAGTTTGTGG AATCTAATTTTGACTTCTTCAAATGGATAGCCATGTTCATCATCTTAGTTCAGGGATTTTCTATATTATTGGCAATGACTTTAAGAGCTCTTGGACCCAA CAATGGATCCAATTATGACATTGACGAGGAATACACCTCGGCCACGCTTCCACTCATCAATCCCCATTCACAAACACCTCCGTACGTTGTCGGTGAACCA CGGTTTTCGATCAAGAATGATGCATGGAATGCCAACAAGTGA
AA sequence Show only first row Show all	>Potri.011G050900.5 pacid=42781041 polypeptide=Potri.011G050900.5.p locus=Potri.011G050900 ID=Potri.011G050900.5.v4.1 annot-version=v4.1 MARVARTCLRSILKIVNSTLGLVGIAMILYGFWMLRVLQRDMESPSFDDFDSTALWFIYTFLSIGVALCLITCLGHISADSSNGICLSCYMVIIFLLLLL ETLVAADILLNSDWEKDLPEDPTGRFHDFREFVESNFDFFKWIAMFIILVQGFSILLAMTLRALGPNNGSNYDIDEEYTSATLPLINPHSQTPPYVVGEP RFSIKNDAWNANK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20740			Tetraspanin family protein (.1...		Potri.011G050900 [exp]	0	1
AT1G04880	ARID		HMG (high mobility group) box ...		Potri.017G055200 [exp]	1.41	0.9453
AT1G25440	CO	COL16	B-box type zinc finger protein...		Potri.010G125100 [exp]	2.00	0.9322	COL6.3
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.013G034400 [exp]	2.64	0.9160
AT1G60010			unknown protein		Potri.008G146500 [exp]	3.74	0.9014
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Potri.004G166600 [exp]	3.74	0.9356
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.001G090800 [exp]	3.87	0.9331
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Potri.003G037800 [exp]	5.83	0.8936
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.003G140800 [exp]	6.70	0.9312
AT3G07650	CO	COL9	CONSTANS-like 9 (.1.2.3.4)		Potri.014G170600 [exp]	7.74	0.9098	Pt-COL11.2
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Potri.004G209900 [exp]	9.38	0.9097

Compare expression of checked genes

Potri.011G050900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.