Plant FIBer expression Database

Potri.011G051000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.011G051000.2 pacid=42780756 polypeptide=Potri.011G051000.2.p locus=Potri.011G051000 ID=Potri.011G051000.2.v4.1 annot-version=v4.1
ATGCATGTGTTGCCTAGACAAGTTCTTGGGATATCAAGATTTGATGTGGTTGTAATAATGGATGTAGCCACTTTGGATGATCAAGTTATTGCAAGGAACA
GAAAGGTTCACTGGTACACCACTAGCAACCATCTGAATATGACAGTTCCTAAGATTTACCCTACGACACCTAGCACAGAGGAAGAATGGTCCGAAAGAAA
AACTGACGGTGGGATAGCTGAAAGTTATTCTTCAGTATCAACATATGCAGAGTCAGAAAATGAGGCTCAAAGTGAAGCTTCGATTCTCTGA
AA sequence
>Potri.011G051000.2 pacid=42780756 polypeptide=Potri.011G051000.2.p locus=Potri.011G051000 ID=Potri.011G051000.2.v4.1 annot-version=v4.1
MHVLPRQVLGISRFDVVVIMDVATLDDQVIARNRKVHWYTTSNHLNMTVPKIYPTTPSTEEEWSERKTDGGIAESYSSVSTYAESENEAQSEASIL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.011G051000
[exp]
0 1
AT4G05160 AMP-dependent synthetase and l... Potri.004G102000
[exp]
5.65 0.8942 Ptr4CL8
AT1G05680 UGT74E2 Uridine diphosphate glycosyltr... Potri.001G389200
[exp]
10.34 0.9075
AT1G68490 unknown protein Potri.008G121000
[exp]
14.42 0.8676
AT2G17880 Chaperone DnaJ-domain superfam... Potri.005G113100
[exp]
15.58 0.8530
AT1G22380 ATUGT85A3 UDP-glucosyl transferase 85A3 ... Potri.016G105400
[exp]
21.00 0.8934
AT1G07040 unknown protein Potri.008G194800
[exp]
25.98 0.8832
AT3G10230 AtLCY, LYC lycopene cyclase (.1.2) Potri.009G159800
[exp]
27.33 0.8767
AT5G05710 Pleckstrin homology (PH) domai... Potri.010G190500
[exp]
31.93 0.8759
AT5G16370 AAE5 acyl activating enzyme 5 (.1) Potri.019G067800
[exp]
35.09 0.8774
AT5G42750 BKI1 BRI1 kinase inhibitor 1 (.1) Potri.002G127100
[exp]
36.33 0.8765

Potri.011G051000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.