Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15390 271 / 5e-85 SDE5 silencing defective 5 (.1.2) AT5G58720 73 / 1e-13 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G042100 [exp] 699 / 0 AT3G15390 271 / 2e-85 silencing defective 5 (.1.2) Potri.001G401900 [exp] 312 / 2e-100 AT3G15390 273 / 2e-85 silencing defective 5 (.1.2) Potri.009G046300 [exp] 105 / 6e-24 AT5G58720 418 / 2e-141 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018188 [exp] 358 / 1e-118 AT3G15390 241 / 1e-73 silencing defective 5 (.1.2) Lus10025646 [exp] 205 / 9e-61 AT3G15390 159 / 6e-44 silencing defective 5 (.1.2) Lus10040668 [exp] 98 / 2e-21 AT5G58720 416 / 1e-140 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3) Lus10018236 [exp] 87 / 5e-18 AT5G58720 417 / 2e-141 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08590 [poplar] [flax] DUF1771 Domain of unknown function (DUF1771)
Representative CDS sequence Show only first row Show all	>Potri.011G051300.1 pacid=42780552 polypeptide=Potri.011G051300.1.p locus=Potri.011G051300 ID=Potri.011G051300.1.v4.1 annot-version=v4.1 ATGGAAGTATCTACTTCCAACATATTGAAATGTGATGATGAGGAGAAGGCATTGGAGGTCTTGCTTGAGGCATTTGGTTCTAAATTTTCTCTTGAACAAA TAGCATCTGCTTATTGCAAGGCAGGCCGAAATGCAGATTTGACTGTTCAAATTCTTCAAGATACGGAGGGAGGTGCCTCTACCTCTTCAAGTCATTCATC CAATGGAGAGGCTATGCTGAGTGAAGGATCTTCTGAGTCATCCAATGGTTATATTTTGAAGAAATGTGATGCAAATGGAAAGTTCAGAAATGTAAAGCAA AAATGGCGTCCAGTTTCAGGAGGCACCGTTTCAAGTGTTCTCGGAAAAAGTTACATTAGATCCATGCCAGTGGGCAATGGCTCTTGTGCCGCAACCAAAC CATTGAAATTGGACTCGCAGGAGTTCCCAATGTCTGAACTTTGGGGAGAAGAACCCAAACAAACCCAATCAAAGCATGATCGTATGCACGAGGATATGGA AGATTTTTTATTCAAAATGCTAGGAGATGGCTTCCAGCTGGATAGGGAAATGATTCGACAAGCTCTAGATACATGTGGGTATGATATGCAAAAGAGCATG GAGAAACTACTTAATTTGTCAGCAGTGATTTTGGACAAAAGGAACAATTATGTTGGTAGATCCACTGGAAAGTTCACAGATGCACGGTCAAATAGTGGAG GACCTTCATGTCAAAAAAATTTACAGTTTATGAGTTCCTATGGAGGCAGTGCAAATAGAATTTCAAATGCAAATGGGGGAGGATCACCTGGCCAGGGGAA AGAGAAAAACAACCTCCAGAAGGAAATTTTGGCCTCACTTTTTAATGGTGCTGAGAGATCTGGGGAGTTATCTGGAAGAATAACAAAGGCTGAGAGGAGG TCAATAGTATATGGAGAGCCAGTGGTTGAACCTCCTACTGACTTTACCTTAGAGAACAGGACTGATTTTATGGACTCTCTGCAAGATTATGACAATGTGT TATCAGTTGAAGATGTAGATGAAGATGATAGTTACCATCTTCTTCGTAAAGCTTGGAAGGAGTATCGGACCACAATGAATGAATTTTACAAAGCTGCTGG TGATGCGTTTGCCAAGGGAGATGATGAGCGAGCAAACAAACTAATGGACGAGGGAAATTTTTTTCGTGACAAGGCTTATGAGGTAGATGAGGAATCTACT CAGAAGATTTTTGGAACCAAAAATGTTGAGACTCAAGACCAGATGTTGCTTGATCTGCATGAACATGGTGCAAAAGATGCAATACGCTCCTTGAAGAGTA ATTTTCTCTTACTCTCAGGCATCCCATCATTCAAGGACCTCAAAGTCATCATTGAGACAAATGAGGTGGATGTCACGAAAGGGGCTCGTAGAAGATTGAT TATGAAGCTATTAGAGAAGGAATCGATAAACTGGACTGAAGGAGCGGATGTTGGAACAATACTAATTCAATTGGATAATATCAACCCTAAGCGCTTGAGT TTCGCCAAAAAATAG
AA sequence Show only first row Show all	>Potri.011G051300.1 pacid=42780552 polypeptide=Potri.011G051300.1.p locus=Potri.011G051300 ID=Potri.011G051300.1.v4.1 annot-version=v4.1 MEVSTSNILKCDDEEKALEVLLEAFGSKFSLEQIASAYCKAGRNADLTVQILQDTEGGASTSSSHSSNGEAMLSEGSSESSNGYILKKCDANGKFRNVKQ KWRPVSGGTVSSVLGKSYIRSMPVGNGSCAATKPLKLDSQEFPMSELWGEEPKQTQSKHDRMHEDMEDFLFKMLGDGFQLDREMIRQALDTCGYDMQKSM EKLLNLSAVILDKRNNYVGRSTGKFTDARSNSGGPSCQKNLQFMSSYGGSANRISNANGGGSPGQGKEKNNLQKEILASLFNGAERSGELSGRITKAERR SIVYGEPVVEPPTDFTLENRTDFMDSLQDYDNVLSVEDVDEDDSYHLLRKAWKEYRTTMNEFYKAAGDAFAKGDDERANKLMDEGNFFRDKAYEVDEEST QKIFGTKNVETQDQMLLDLHEHGAKDAIRSLKSNFLLLSGIPSFKDLKVIIETNEVDVTKGARRRLIMKLLEKESINWTEGADVGTILIQLDNINPKRLS FAKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15390		SDE5	silencing defective 5 (.1.2)		Potri.011G051300 [exp]	0	1
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.012G010001 [exp]	9.64	0.7655
AT2G30700			unknown protein		Potri.007G133800 [exp]	21.49	0.7554
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.012G011345 [exp]	31.63	0.6592
AT4G01960			unknown protein		Potri.014G118000 [exp]	39.00	0.7193
AT5G08780			winged-helix DNA-binding trans...		Potri.005G069700 [exp]	48.47	0.6695
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Potri.005G124400 [exp]	52.64	0.6610
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Potri.010G219200 [exp]	54.09	0.7049
AT2G43970			RNA-binding protein (.1.2)		Potri.007G144800 [exp]	84.26	0.6984
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Potri.001G099900 [exp]	128.23	0.6650
AT4G01040			Glycosyl hydrolase superfamily...		Potri.014G096700 [exp]	142.82	0.6458

Compare expression of checked genes

Potri.011G051300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.