Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04950 680 / 0 AtGRXS17 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) AT4G32580 181 / 9e-55 Thioredoxin superfamily protein (.1) AT3G54900 112 / 8e-29 ATGRXCP, CXIP1 GLUTAREDOXIN, CAX interacting protein 1 (.1) AT3G15660 108 / 2e-27 ATGRX4 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) AT2G38270 107 / 9e-26 ATGRX2, CXIP2 GLUTAREDOXIN, CAX-interacting protein 2 (.1) AT5G63030 49 / 4e-07 GRXC1 glutaredoxin C1, Thioredoxin superfamily protein (.1) AT1G11530 49 / 7e-07 ATCXXS1 C-terminal cysteine residue is changed to a serine 1 (.1) AT3G17880 46 / 4e-05 ATHIP2, ATTDX HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) AT3G51030 43 / 5e-05 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) AT2G20270 44 / 7e-05 Thioredoxin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G042200 [exp] 841 / 0 AT4G04950 750 / 0.0 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Potri.014G141200 [exp] 116 / 2e-30 AT3G54900 197 / 5e-65 GLUTAREDOXIN, CAX interacting protein 1 (.1) Potri.003G060600 [exp] 103 / 1e-25 AT3G15660 201 / 7e-67 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) Potri.016G119200 [exp] 100 / 2e-23 AT2G38270 393 / 2e-138 GLUTAREDOXIN, CAX-interacting protein 2 (.1) Potri.005G232700 [exp] 56 / 1e-09 AT3G51030 162 / 5e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.006G110100 [exp] 56 / 3e-09 AT3G08710 178 / 1e-58 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.016G138800 [exp] 54 / 1e-08 AT3G08710 208 / 1e-70 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.004G031700 [exp] 54 / 1e-08 AT1G11530 179 / 1e-59 C-terminal cysteine residue is changed to a serine 1 (.1) Potri.019G062000 [exp] 49 / 1e-06 AT3G08710 164 / 6e-53 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011187 [exp] 339 / 3e-115 AT4G04950 322 / 8e-110 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10018487 [exp] 300 / 1e-99 AT4G04950 280 / 5e-93 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10011188 [exp] 274 / 1e-89 AT4G04950 297 / 1e-99 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10018486 [exp] 159 / 1e-46 AT4G04950 195 / 2e-61 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10041501 [exp] 100 / 1e-23 AT3G54900 159 / 4e-49 GLUTAREDOXIN, CAX interacting protein 1 (.1) Lus10012592 [exp] 99 / 1e-23 AT3G54900 156 / 2e-48 GLUTAREDOXIN, CAX interacting protein 1 (.1) Lus10002847 [exp] 97 / 3e-22 AT2G38270 384 / 4e-135 GLUTAREDOXIN, CAX-interacting protein 2 (.1) Lus10008687 [exp] 91 / 2e-19 AT3G15660 197 / 7e-62 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) Lus10007630 [exp] 56 / 3e-09 AT1G11530 143 / 4e-45 C-terminal cysteine residue is changed to a serine 1 (.1) Lus10018383 [exp] 54 / 2e-08 AT1G11530 145 / 3e-46 C-terminal cysteine residue is changed to a serine 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin CL0172 [poplar] [flax] Thioredoxin PF00462 [poplar] [flax] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Potri.011G051400.1 pacid=42780277 polypeptide=Potri.011G051400.1.p locus=Potri.011G051400 ID=Potri.011G051400.1.v4.1 annot-version=v4.1 ATGAAAAAACAAAGACACAGGTTTCTATTGATAAATATAGGAAAGGGAAGTTGTGCTGTGTCTGCAAATTTCTGCGAGTGTGTGGTTGCAGGCTGGAATA AAAAAAAAAAGAGTGGGTCGGTAAAGGACGTGAAATCAAAGGCTGAGCTTGATAACATAACCAAAAGTGGAGAAGCAGTAATCATTCACTTCTGGGCATC ATGGTGTGATGCTTCAAAACAAATGGACCAAGTCTTTTCTCATCTCTCCACTGATTTTCCTAACACCCACTTTCTCACGGTTGAAGCAGAGGAGCAACCA GAGATATCAGAGGCCTTTTCAGTGTCTTCTGTGCCTTATTTTGTTTTCGTGAAGGATGGCAAGACAGTTGATACATTGGAAGGTGCAGATCCTTCCAGTT TGGCAACCAAAGTCACTAGAGTTGCTGGCTCAGCTAACCCTGGAGAACCTGCAGCCCCTGCCAGCCTTGGAATGGCTGCTGGACCTACTGTTCTTGAAAC AGTGAAAGAGTTTGCCAAAGAAAATGGCTCCTCCCCACAAGCAAACCAAGCACAACCTGGCCTCAGTGATACATTAAAAAATCGATTGCAACAGCTGATT GACTCTCACCCTATCATGCTATTTATGAAAGGGAATCCTGAAGCTCCTAGGTGTGGGTTTAGCCAAAAAGTTATTGATATTTTGAAGGATGAAAATGTGA AATTCGGAACTTTTGATATCTTATCTGACAATGAGGTTCGTGACGGGTTGAAGTTGCTCTTGAACTGGCCCACATTTCCTCAGCTGTACTGCAAGGGAGA GCTTCTTGGCGGATGTGACATAGCAATTGCAATGCATGAGAGTGGTGAATTAAAAGAAGTTTTCAGAGATCATGGAATTGATGCTATTGGTTCCGTTGAG GCAAAAGTGAGTGGAAGTGAAAATGGAAAGGGCGGCATTACACAATCCACTGGCTTGAGCACGACCTTGACCTCCAGACTTGAAAGCCTGATTAATTCAA GCCCAGTTATGTTGTTTATGAAGGGAAAACCTACCGAGCCAAAGTGTGGTTTCAGTGGGAAGGTAGTTGCAATCCTTCAAGAGGAAAAGGTGACCTTTGA GAGCTTTGATATTCTCACCGACGAAGAAGTCCGTCAGGGGCTTAAAGTCTATTCTAATTGGTCCAGTTACCCTCAACTGTACATCAAAGGTGAACTTATT GGCGGATCAGACATCGTGCTGGAGATGCAGAAAAGCGGGGAACTTAAAAGGATTTTGGTTGAGAAAGGGATTGTTCAGAAGGAGACTCTAGAAGATCACT TAAAGAGCCTGATCACTTCTTCGCCAGTGATGCTCTTCATGAAGGGCACCCCAGATGCCCCCAGATGTGGTTTCAGTTCCAAGGTTGTGAATGCCCTGAA GGAGAAGGGTGTCAGTTTTGGGTCCTTTGATATTTTATCAGATGAGGCAGTGAGGCAGGGACTAAAGGTCTTCTCGAATTGGCCAACCTTTCCTCAGCTT TATTACAAAGGTGAGCTAATAGGCGGTTGTGATATTATACTGGAGCTGCGAGACAACGGAGAACTAAAATCCACCCTATCTGAGTAG
AA sequence Show only first row Show all	>Potri.011G051400.1 pacid=42780277 polypeptide=Potri.011G051400.1.p locus=Potri.011G051400 ID=Potri.011G051400.1.v4.1 annot-version=v4.1 MKKQRHRFLLINIGKGSCAVSANFCECVVAGWNKKKKSGSVKDVKSKAELDNITKSGEAVIIHFWASWCDASKQMDQVFSHLSTDFPNTHFLTVEAEEQP EISEAFSVSSVPYFVFVKDGKTVDTLEGADPSSLATKVTRVAGSANPGEPAAPASLGMAAGPTVLETVKEFAKENGSSPQANQAQPGLSDTLKNRLQQLI DSHPIMLFMKGNPEAPRCGFSQKVIDILKDENVKFGTFDILSDNEVRDGLKLLLNWPTFPQLYCKGELLGGCDIAIAMHESGELKEVFRDHGIDAIGSVE AKVSGSENGKGGITQSTGLSTTLTSRLESLINSSPVMLFMKGKPTEPKCGFSGKVVAILQEEKVTFESFDILTDEEVRQGLKVYSNWSSYPQLYIKGELI GGSDIVLEMQKSGELKRILVEKGIVQKETLEDHLKSLITSSPVMLFMKGTPDAPRCGFSSKVVNALKEKGVSFGSFDILSDEAVRQGLKVFSNWPTFPQL YYKGELIGGCDIILELRDNGELKSTLSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Potri.011G051400 [exp]	0	1
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Potri.003G051400 [exp]	10.67	0.9390
AT4G03240		ATFH, FH	frataxin homolog (.1)		Potri.013G150400 [exp]	11.22	0.8832
AT2G42975			unknown protein		Potri.002G058000 [exp]	16.15	0.9330
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Potri.010G116500 [exp]	16.18	0.9364
AT5G09830			BolA-like family protein (.1)		Potri.001G309200 [exp]	18.49	0.9223
AT2G35830			unknown protein		Potri.010G217500 [exp]	24.59	0.9278
					Potri.005G112150 [exp]	26.98	0.9321
AT1G69935		SHW1	short hypocotyl in white light...		Potri.008G190900 [exp]	36.57	0.9249
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Potri.007G130100 [exp]	41.78	0.9168
AT5G62140			unknown protein		Potri.012G134500 [exp]	42.23	0.9242

Compare expression of checked genes

Potri.011G051400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.