Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16820 119 / 3e-31 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT5G62020 115 / 3e-31 HSF AT-HSFB2A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) AT4G17750 116 / 3e-30 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT5G43840 112 / 3e-30 HSF AT-HSFA6A heat shock transcription factor A6A (.1) AT1G32330 115 / 4e-30 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT4G36990 112 / 5e-30 HSF AT-HSFB1, ATHSF4, HSF4, HsfB1 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) AT3G22830 112 / 4e-29 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT2G41690 108 / 4e-29 HSF AT-HSFB3, HSFB3 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) AT4G13980 112 / 7e-29 HSF AT-HSFA5 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) AT5G03720 110 / 2e-28 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G042600 [exp] 305 / 2e-106 AT1G32330 132 / 2e-36 heat shock transcription factor A1D (.1) Potri.016G056500 [exp] 122 / 2e-34 AT2G41690 218 / 1e-71 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) Potri.012G138900 [exp] 121 / 2e-33 AT5G62020 230 / 2e-74 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.001G108100 [exp] 119 / 2e-32 AT4G11660 285 / 2e-94 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Potri.015G141100 [exp] 118 / 3e-32 AT5G62020 233 / 8e-76 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.010G082000 [exp] 117 / 2e-31 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.001G273700 [exp] 115 / 3e-31 AT1G46264 251 / 2e-82 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.014G141400 [exp] 117 / 7e-31 AT4G18880 251 / 4e-79 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.008G157600 [exp] 115 / 1e-30 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011185 [exp] 222 / 7e-74 AT5G62020 143 / 7e-42 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Lus10018488 [exp] 209 / 1e-68 AT4G36990 135 / 3e-39 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10008007 [exp] 128 / 2e-35 AT4G11660 306 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10039376 [exp] 120 / 3e-32 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10040091 [exp] 121 / 5e-32 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10006618 [exp] 120 / 5e-32 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10030956 [exp] 120 / 5e-32 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10011065 [exp] 120 / 6e-32 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10000312 [exp] 119 / 1e-31 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10014994 [exp] 117 / 1e-31 AT5G62020 259 / 2e-85 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00447 [poplar] [flax] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Potri.011G051600.1 pacid=42780959 polypeptide=Potri.011G051600.1.p locus=Potri.011G051600 ID=Potri.011G051600.1.v4.1 annot-version=v4.1 ATGGCGGCCACTTTCTCTCAGCTTGACCAAGACACAACAAGCAAGAGTTCTTCAAGCAACACCAGGTCTCCAAGAACAAGAAGCCCTGCTCCATTTTTAT CCAAGACTTACGACTTGCTAGAAGAAGGTGGGGCTCATGATAGCGTTGATGATCATCCTCATGGCAAGAGAGTTGTTTCTTGGAATGCAGAGGGAAATGG GTTTGTAGTGTGGTCTCCAGCTGAGTTCTCAGAGCTCACTTTGCCTAGATACTTCAAGCACAGCAACTTCTCTAGCTTCATCCGTCAGCTTAACACTTAT GGATTCAAGAAAACATCATCGAAGCAATGGGAATTCAAGCATGAAAAGTTTCAGAAAGGGAGGAGGCACATGCTAGTCGAGATCATTCGAAAAAAATGTG AGCCTAGTATGTTTCCAGCATATTTAAAGGCTTCTTCTAATCAAGAGAATGCAATAATTGACATGGAAGAAACTAATTGTTTGACGCTCATGGCGGAGAA CAAGAACCTTCGAAGAGAGAAACTTGAACTGCAAATCCAAATAGCACAATTCAAGGCTCTAGAAACTAAGTTATTGGACTGTCTTAATCAATACAATATG GGAAACCACCAGAACAAAACCAGGAGGCTATGTTAA
AA sequence Show only first row Show all	>Potri.011G051600.1 pacid=42780959 polypeptide=Potri.011G051600.1.p locus=Potri.011G051600 ID=Potri.011G051600.1.v4.1 annot-version=v4.1 MAATFSQLDQDTTSKSSSSNTRSPRTRSPAPFLSKTYDLLEEGGAHDSVDDHPHGKRVVSWNAEGNGFVVWSPAEFSELTLPRYFKHSNFSSFIRQLNTY GFKKTSSKQWEFKHEKFQKGRRHMLVEIIRKKCEPSMFPAYLKASSNQENAIIDMEETNCLTLMAENKNLRREKLELQIQIAQFKALETKLLDCLNQYNM GNHQNKTRRLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16820	HSF	ATHSF3, ATHSFA1...	ARABIDOPSIS THALIANA CLASS A H...		Potri.011G051600 [exp]	0	1
AT5G23350			GRAM domain-containing protein...		Potri.004G068200 [exp]	1.73	0.8225
AT5G23370			GRAM domain-containing protein...		Potri.004G068100 [exp]	4.00	0.7979
AT5G23350			GRAM domain-containing protein...		Potri.004G068150 [exp]	5.74	0.7791
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027700 [exp]	10.00	0.7205
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.003G185050 [exp]	10.58	0.7287
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Potri.015G086000 [exp]	14.28	0.7759
AT3G61700			Plant protein 1589 of unknown ...		Potri.015G019500 [exp]	14.42	0.6642
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.002G176300 [exp]	14.42	0.7260	Pt-ATHB.4
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.002G226600 [exp]	23.91	0.7011	NFR1.1
AT4G05070			Wound-responsive family protei...		Potri.011G041700 [exp]	24.37	0.6818

Compare expression of checked genes

Potri.011G051600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.