Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57880 988 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 952 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 931 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT4G20080 874 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G06850 867 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G11610 855 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 837 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 787 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 761 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 751 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G043000 [exp] 1418 / 0 AT3G57880 988 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 1002 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 992 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 946 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 936 / 0 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 931 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.014G081700 [exp] 895 / 0 AT4G11610 1422 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 887 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.002G158000 [exp] 882 / 0 AT4G11610 1400 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016280 [exp] 973 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 972 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10033343 [exp] 907 / 0 AT5G12970 821 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 875 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 870 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 868 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 853 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 803 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 731 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10031244 [exp] 706 / 0 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0484 [poplar] [flax] Peroxisome PF08372 [poplar] [flax] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.011G052000.1 pacid=42781712 polypeptide=Potri.011G052000.1.p locus=Potri.011G052000 ID=Potri.011G052000.1.v4.1 annot-version=v4.1 ATGCCTCCAAAAGAGAAACCAAAGAAGGACTACACCCTTAAGGTGACATCACCTGATATCGGTGGAAGGACAGTCATAGGCAGTGACAAGCTTACTCTAG TTGAACAAAGACAGTTTCTTTATGTCAGAATTGTGAGAGCCAATGGCTTGCCAGTGAACAACATGACTGGCACTTGTGACCCTTTTGTCGAGCTGAAGAT CGGAAACTACAAGGGAATAACTAGATGCTTTGAACAGACCTCAAACCCGGAATGGAATGAAGTCTATGCTTTCACAAGAGATCGCCTTCAGGGTGGGAGA TTGGAGATCTTGGTAAGAGATAAAGAATCTGCGATTAACGAGATTATTGGCTGTCTTTCCTTTGATTTGGGCGATACTCCTACGCGGTTTCCACCAAATA GTCCATTGGCACCACAGTGGTATAAATTGGAGGATCGCAATGGGGTTAAGGTTGCAGGAGAGTTGATGTTATCTGCTTGGATAGGGAATCAAGCTGACGA CGCGTTTTCTGTTGCTTGGCATTCTGATGCAGCTGCTGTTAGCGGCAAAAGCGTGACAAACATTCGTTCTAATGTATACCTCTCCCCTGTGCTTTGGTAT TTAAGAGTTCAAGTGATTGCGGCACAGGATTTGGCACCTTCAGACAAGAACAGGAAACCAGAAGCTTACATCAAGGCTGTTCTCGGGAACTTGGTTTTGA GGACTACAGTTTCAAAGGATAAGAATCCGAATCCTACTTGGAATGAGGAAGTGATGTTTGTTGCAGCAGAGCCATTTGATGATCATTTAATTTTAAGTGT GGAGGACAAGATGGGAGCTAATAAGGAGGTATGTTTAGGGAGGTCTGTGATTCCTTTGCACCAAGTGGAGAAGAGGTTGATGCCTCAAGCTATTGGTGCT CAGTGGATTAATCTCGAGAAGTATGTTGCGGAGGGTGAGGAGAAGACAGAAGTGAAGTTTGCCAGTAGACTTCATTTGAGGATCTTTTTAGATGGTTTAT ATCATGTTTTTGATGAACCAACTTACTACAGCAGTGATTTGAGGGCAACATCTCCCAAGTTATGGCCAGAGAAAATCGGGGTCTTGGAGCTAGGTATCCT AAAAGCTGAAGGGTTGCTACCAACGAAGTCCAGGGATGGTCGTGGAACTACCGATGCTTATTGTGTAGCGAAATACGGGCGGAAGTGGGTTAGGACGAGT ACTATAGTAGACAGTTATGCTCCAAAGTGGAATGAGCAATACTGCTGGGATGTTTATGATCCATATACAGTTGTTACCATTGGAGTTTTTGATAACTGTC ATTTACAGGCAGGGGACAAGAACGATGGGACGGGTGATCCAAGACTTGGCAAAGTAAGGATTCGGTTGTCTACTCTCGAAACTGGTAGGATTTATACACA TTCCTACCCGCTTTTAGTCTTGCAACCCAATGGATTGAAGAAAATGGGAGAGCTTCACTTGGCTGTGAAATTTAGTTGCAACAACTGGATCAACTTGTTT CATACTTACTCACAACCTTTGCTTCCTATGATGCATTACCTTCAACCATTATCAGTCTATCAGCTTGATAGTTTAAGACACCAAGCTACTTATATTCTCT CTTTGAGGCTTGGTCGTGCCGACCCACCCCTAAGGAGGGAGGTTTTGGAGTACATGCTTGATACAGGTGTAAATAGATGGAGCTTGAGAAGAGCAAATGC AAATTGTGAGAGAGTCATGACATGTTTGAGTGGAATCGTTGTTCTTTGGAGGCAGTTTGATCAAATACGCCATTGGAAGATCAATTCAGCAATCACAGTC CTGATTTACTCATTGTTCGTTGCCATGGTTATGTGCCCAAAACTAATATTGACTGCATTCTTTCTAGCTCCTTTCGTGCTTGGAGTTTGGTGCTTTCCAA AGAGGCCAAGACATCCTCCACATATGGATACCAAATTATCCCATGCTGAAACTGCACAACCTGATGTACTTGACGAGGAATTCGATTCGTTTCCATCTTC CAAGCAAGGTGAAGCACTAAAGACAAGGTATGATAGATTGAGAGGAATTTCAGGGAGGTGGATGATAATTATAGGAGATTTGGCAACTCAATTGGAGAGG ATTCATGCTCTTGTAAGCTGGAGGGATTCACGAGCTACTGCAATGTTTTTGGCATTCTGTCTCATTGCTTGTTTTTTGGTTCATAAAGTTCAGTTCAAGT ACTTGGTTCTTGTTATAGGGACTTATGCAATGAGGCCTCCAAGACTTCGTGCTGGCATTCCTTCCATTCCTCAAAATTTCCTCAGGAGATTGCCTGCTAA AACTGATAGCATGTTGTAA
AA sequence Show only first row Show all	>Potri.011G052000.1 pacid=42781712 polypeptide=Potri.011G052000.1.p locus=Potri.011G052000 ID=Potri.011G052000.1.v4.1 annot-version=v4.1 MPPKEKPKKDYTLKVTSPDIGGRTVIGSDKLTLVEQRQFLYVRIVRANGLPVNNMTGTCDPFVELKIGNYKGITRCFEQTSNPEWNEVYAFTRDRLQGGR LEILVRDKESAINEIIGCLSFDLGDTPTRFPPNSPLAPQWYKLEDRNGVKVAGELMLSAWIGNQADDAFSVAWHSDAAAVSGKSVTNIRSNVYLSPVLWY LRVQVIAAQDLAPSDKNRKPEAYIKAVLGNLVLRTTVSKDKNPNPTWNEEVMFVAAEPFDDHLILSVEDKMGANKEVCLGRSVIPLHQVEKRLMPQAIGA QWINLEKYVAEGEEKTEVKFASRLHLRIFLDGLYHVFDEPTYYSSDLRATSPKLWPEKIGVLELGILKAEGLLPTKSRDGRGTTDAYCVAKYGRKWVRTS TIVDSYAPKWNEQYCWDVYDPYTVVTIGVFDNCHLQAGDKNDGTGDPRLGKVRIRLSTLETGRIYTHSYPLLVLQPNGLKKMGELHLAVKFSCNNWINLF HTYSQPLLPMMHYLQPLSVYQLDSLRHQATYILSLRLGRADPPLRREVLEYMLDTGVNRWSLRRANANCERVMTCLSGIVVLWRQFDQIRHWKINSAITV LIYSLFVAMVMCPKLILTAFFLAPFVLGVWCFPKRPRHPPHMDTKLSHAETAQPDVLDEEFDSFPSSKQGEALKTRYDRLRGISGRWMIIIGDLATQLER IHALVSWRDSRATAMFLAFCLIACFLVHKVQFKYLVLVIGTYAMRPPRLRAGIPSIPQNFLRRLPAKTDSML

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57880			Calcium-dependent lipid-bindin...		Potri.011G052000 [exp]	0	1
AT1G67040			unknown protein		Potri.017G116000 [exp]	5.65	0.8677
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Potri.012G127800 [exp]	6.16	0.8837
AT3G12530		PSF2	PSF2 (.1.2)		Potri.008G056200 [exp]	6.16	0.8314
AT3G14880			unknown protein		Potri.007G098800 [exp]	10.53	0.8198
AT2G04410			RPM1-interacting protein 4 (RI...		Potri.012G092601 [exp]	12.84	0.8623
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Potri.001G110300 [exp]	16.43	0.8390
AT1G20670			DNA-binding bromodomain-contai...		Potri.016G141400 [exp]	20.19	0.8429
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Potri.002G057800 [exp]	24.00	0.8574	Pt-VCL1.3
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Potri.007G002600 [exp]	25.65	0.8394
AT3G28880			Ankyrin repeat family protein ...		Potri.004G129100 [exp]	27.71	0.8272

Compare expression of checked genes

Potri.011G052000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.