Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03540 100 / 2e-27 Uncharacterised protein family (UPF0497) (.1) AT1G03700 97 / 3e-26 Uncharacterised protein family (UPF0497) (.1) AT4G25040 59 / 2e-11 Uncharacterised protein family (UPF0497) (.1) AT4G20390 59 / 3e-11 Uncharacterised protein family (UPF0497) (.1) AT5G44550 58 / 7e-11 Uncharacterised protein family (UPF0497) (.1) AT1G14160 55 / 2e-09 Uncharacterised protein family (UPF0497) (.1) AT3G11550 54 / 4e-09 CASP2 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) AT2G36100 50 / 8e-08 CASP1 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) AT5G06200 47 / 1e-06 CASP4 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) AT2G27370 45 / 5e-06 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G043300 [exp] 190 / 1e-62 AT4G03540 103 / 2e-28 Uncharacterised protein family (UPF0497) (.1) Potri.013G131700 [exp] 98 / 9e-26 AT1G03700 159 / 9e-50 Uncharacterised protein family (UPF0497) (.1) Potri.019G100300 [exp] 88 / 2e-22 AT1G03700 150 / 6e-47 Uncharacterised protein family (UPF0497) (.1) Potri.011G154900 [exp] 65 / 3e-13 AT4G20390 169 / 1e-53 Uncharacterised protein family (UPF0497) (.1) Potri.001G442300 [exp] 63 / 1e-12 AT5G44550 173 / 4e-55 Uncharacterised protein family (UPF0497) (.1) Potri.017G088100 [exp] 56 / 5e-10 AT4G03540 96 / 1e-25 Uncharacterised protein family (UPF0497) (.1) Potri.006G208800 [exp] 51 / 4e-08 AT5G06200 201 / 7e-66 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.012G104300 [exp] 50 / 4e-08 AT4G25040 97 / 7e-26 Uncharacterised protein family (UPF0497) (.1) Potri.017G062100 [exp] 47 / 5e-07 AT4G25040 82 / 6e-20 Uncharacterised protein family (UPF0497) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011179 [exp] 126 / 3e-37 AT1G03700 155 / 7e-49 Uncharacterised protein family (UPF0497) (.1) Lus10015443 [exp] 112 / 1e-31 AT1G03700 127 / 2e-37 Uncharacterised protein family (UPF0497) (.1) Lus10000781 [exp] 55 / 2e-09 AT5G44550 171 / 5e-54 Uncharacterised protein family (UPF0497) (.1) Lus10029409 [exp] 54 / 3e-09 AT3G11550 234 / 9e-79 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10008067 [exp] 55 / 5e-09 AT5G11720 1072 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10021332 [exp] 52 / 2e-08 AT2G36100 229 / 1e-76 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) Lus10017008 [exp] 52 / 2e-08 AT2G27370 228 / 5e-76 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) Lus10004205 [exp] 50 / 7e-08 AT3G11550 232 / 8e-78 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10012808 [exp] 49 / 7e-08 AT3G06390 119 / 1e-34 Uncharacterised protein family (UPF0497) (.1) Lus10037160 [exp] 49 / 3e-07 AT1G14160 214 / 9e-71 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [poplar] [flax] Marvel-like PF04535 [poplar] [flax] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Potri.011G052100.1 pacid=42781193 polypeptide=Potri.011G052100.1.p locus=Potri.011G052100 ID=Potri.011G052100.1.v4.1 annot-version=v4.1 ATGGCTAAGAGTAACAAGATTTTCACCAACACCCTCAGGCTCCTTGCCTTGGCTGCCACTGTGGTTGCAATTGTCTTCATGGTCACCAGCCATGACTCTG CCCAAGTCTTGAACTTAACATTCACTGCAAAATATAGCAACACACCAGCATTCAAGTTCTTGGTGATTGGAGAGGCAATTGCAGGTGGATACACCGTTAT ATCTATCCTTCTCTCGTTCAAAGGCTTGTTTTGGCGCTTGATTGTAATCCTAGATATGGTCACAACAGTGCTACTCACATCAAGCATTTCTGCTGCGTTG GCAATAGCTCAAGTGGGCAAGAAAGGGAACACTCATGCTGGTTGGCTACCAATTTGTGGACAAGTTCCTGATTTCTGCGACTATGTGACTATAGCTCTTA TTGCTGGTTTTGCTGCAGCAATAATTTACTTTGTGCTTCTTCTCTGTTCTCTCTATGTTGTCCTCAGTCCTATTTTTGTTGCAACACCTTAG
AA sequence Show only first row Show all	>Potri.011G052100.1 pacid=42781193 polypeptide=Potri.011G052100.1.p locus=Potri.011G052100 ID=Potri.011G052100.1.v4.1 annot-version=v4.1 MAKSNKIFTNTLRLLALAATVVAIVFMVTSHDSAQVLNLTFTAKYSNTPAFKFLVIGEAIAGGYTVISILLSFKGLFWRLIVILDMVTTVLLTSSISAAL AIAQVGKKGNTHAGWLPICGQVPDFCDYVTIALIAGFAAAIIYFVLLLCSLYVVLSPIFVATP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03540			Uncharacterised protein family...		Potri.011G052100 [exp]	0	1
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Potri.018G146200 [exp]	1.00	0.9346
AT5G06240		EMB2735	embryo defective 2735 (.1)		Potri.006G208200 [exp]	3.46	0.8894
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Potri.009G072900 [exp]	6.24	0.8502	Pt-AS1.3
AT5G65090		DER4, MRH3, BST...	DEFORMED ROOT HAIRS 4, BRISTLE...		Potri.005G078000 [exp]	9.21	0.7657
AT5G44440			FAD-binding Berberine family p...		Potri.011G157900 [exp]	11.83	0.7488
AT4G14030		SBP1	selenium-binding protein 1 (.1...		Potri.017G060000 [exp]	12.64	0.7613	SBP.2
AT3G63240			DNAse I-like superfamily prote...		Potri.005G212700 [exp]	13.60	0.8171
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Potri.010G237000 [exp]	28.72	0.7882
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Potri.001G290600 [exp]	32.04	0.7772
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Potri.006G224600 [exp]	34.87	0.7495

Compare expression of checked genes

Potri.011G052100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.