Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33760 748 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 433 / 2e-145 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G01510 432 / 2e-145 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 424 / 1e-141 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 424 / 1e-141 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 421 / 2e-138 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 412 / 1e-136 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G11460 406 / 1e-134 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 405 / 2e-134 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 409 / 9e-134 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G043400 [exp] 994 / 0 AT2G33760 775 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G077700 [exp] 448 / 3e-151 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 443 / 5e-149 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G001000 [exp] 441 / 2e-148 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G168800 [exp] 441 / 3e-148 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 444 / 4e-148 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 436 / 6e-144 AT3G22690 582 / 0.0 unknown protein Potri.007G050200 [exp] 429 / 2e-143 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 428 / 1e-140 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025490 [exp] 778 / 0 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 445 / 8e-150 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 426 / 1e-140 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 424 / 4e-139 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 417 / 6e-139 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 416 / 2e-138 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040504 [exp] 413 / 4e-137 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024876 [exp] 419 / 6e-137 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10029436 [exp] 410 / 2e-135 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014211 [exp] 408 / 2e-135 AT3G11460 791 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.011G052300.1 pacid=42781128 polypeptide=Potri.011G052300.1.p locus=Potri.011G052300 ID=Potri.011G052300.1.v4.1 annot-version=v4.1 ATGGAGACCAAACAACCCCATAAACTCCCACATTCTCCGGCCTACAATTTCCTTCTCCAAGCTGGACCACGTCTCTATCTTCTCCACCAAGTCCACGCCC ACATTATAGTCTCTGGCTATGGTCGCAGCCGATCTCTTCTTACTAAGCTTCTCAATTTAGCTTGCGCTGCTGGCTCCATTAGCTACACGCGCCAAATCTT TCTCGCTGTCCCAAATCCAGATTCTTTCCTCTTCACTTCCCTTATCAAATCCACCTCCAAATCCCACAACTTCTCAATTTATTCCCTTTACTTCTATAGC CGCATGGTCCTTTCTAATGTTTCACCTTCAAATTATACTTTTACGAGTGTGATTAAATCTTGTGCTGATTTATCGGCTCTGAAACATGGTAGGGTTGTTC ATGGGCATGTTTTGGTTCACGGGTTTGGATTGGATGTGTATGTTCAAGCTGCTTTGGTGGCTCTTTATGGGAAGTGTGGTGATTTGATTAATGCGAGGAA AGTGTTTGATAAAATACGTGAGAGAAGTATTGTGGCATGGAATTCAATGATTTCTGGGTATGAGCAAAACGGGTTTGCTAAAGAGGCAATTGGGTTGTTT GATCGAATGAAGGAAACGGGTGTTGAACCGGATTCGGCCACATTTGTGAGTGTTCTATCCGCTTGTGCTCACTTGGGTGCATTTAGTTTAGGGTGTTGGG TGCATGAGTATATTGTTGGTAATGGCTTAGATTTGAATGTGGTGCTTGGTACTTCGTTGATTAATATGTATATAAGGTGTGGGAATGTGAGTAAAGCGAG AGAGGTTTTTGATTCGATGAAGGAAAGGAATGTAGTGGCTTGGACGGCAATGATTTCTGGGTATGGAACAAATGGTTATGGTAGCCAAGCAGTTGAATTG TTTCATGAAATGAGAAGAAATGGATTATTTCCTAATAGTATTACATTTGTTGCTGTTTTGTCAGCATGTGCTCATGCAGGGTTAGTGAATGAAGGGCGCC GGTTGTTTGCAAGCATAAGAGAAGAGTATCACTTGGTGCCTGGGGTGGAGCATAATGTTTGCTTGGTGGATATGCTTGGTCGTGCAGGACTTCTCGATGA AGCATACAATTTTATCAAAGAAGAAATTCCTGAAAACCCAGCACCTGCTATTTTGACGGCGATGCTTGGAGCTTGCAAGATGCATAAGAATTTTGACCTT GGAGCACAAGTTGCTGAGCATCTCTTAGCTGCCGAACCAGAAAATCCAGCTCATTACGTGATACTCTCAAATATATATGCTTTGGCAGGTAGAATGGACC AGGTGGAAATAGTCAGAAACAATATGATTCGAAAATGCCTGAAGAAACAAGTTGGCTATAGTACAGTAGAAGTGGATCAAAAAACTTACTTGTTTAGCAT GGGGGACAAGTCTCACTCTGAGACAAACGCGATTTATCATTATCTAGATGAGTTGATGTGGAAGTGTAGCGAAGCGGGTTACGTGCCAGTATCTGATTCA GTGATGCATGAATTGGAAGAGGAGGAGAGAGAATATGCACTTAGATACCATAGTGAGAAGCTCGCAATAGCATTTGGGTTATTGAAAACGAGCCATGGAA CTCCTATCAGGATAGTGAAGAACCTTCGAATGTGTGAAGATTGTCATTCGGCCATTAAATTTATTTCAGCTATCTCCAGTAGAGAGATTATTGTCCGTGA TAAGCTTCGCTTCCATCACTTCAAGGTCGGCTCATGTTCTTGTCTGGATTACTGGTGA
AA sequence Show only first row Show all	>Potri.011G052300.1 pacid=42781128 polypeptide=Potri.011G052300.1.p locus=Potri.011G052300 ID=Potri.011G052300.1.v4.1 annot-version=v4.1 METKQPHKLPHSPAYNFLLQAGPRLYLLHQVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYS RMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLF DRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVEL FHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAILTAMLGACKMHKNFDL GAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMIRKCLKKQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLDELMWKCSEAGYVPVSDS VMHELEEEEREYALRYHSEKLAIAFGLLKTSHGTPIRIVKNLRMCEDCHSAIKFISAISSREIIVRDKLRFHHFKVGSCSCLDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33760			Pentatricopeptide repeat (PPR)...		Potri.011G052300 [exp]	0	1
AT2G33760			Pentatricopeptide repeat (PPR)...		Potri.004G043400 [exp]	4.24	0.9074
AT2G44880			Pentatricopeptide repeat (PPR-...		Potri.014G046200 [exp]	10.39	0.8926
AT4G35130			Tetratricopeptide repeat (TPR)...		Potri.004G178200 [exp]	17.66	0.8865
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.006G105700 [exp]	19.62	0.8653
AT2G01390		EMB3111	EMBRYO DEFECTIVE 3111, Tetratr...		Potri.005G127500 [exp]	22.89	0.8817
AT1G79540			Pentatricopeptide repeat (PPR)...		Potri.006G049400 [exp]	26.22	0.8561
AT1G30010			Intron maturase, type II famil...		Potri.004G132450 [exp]	27.74	0.8727
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Potri.001G019500 [exp]	29.84	0.8677
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	30.57	0.8806
AT1G07740			Tetratricopeptide repeat (TPR)...		Potri.003G204100 [exp]	31.52	0.8568

Compare expression of checked genes

Potri.011G052300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.