Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21700 638 / 0 Protein of unknown function (DUF2921) (.1) AT1G52780 159 / 1e-39 Protein of unknown function (DUF2921) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G087400 [exp] 614 / 0 AT4G21700 607 / 0.0 Protein of unknown function (DUF2921) (.1) Potri.001G175600 [exp] 166 / 7e-42 AT1G52780 1107 / 0.0 Protein of unknown function (DUF2921) (.1) Potri.006G187000 [exp] 113 / 4e-25 AT1G52780 424 / 4e-131 Protein of unknown function (DUF2921) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005493 [exp] 1000 / 0 AT4G21700 625 / 0.0 Protein of unknown function (DUF2921) (.1) Lus10006025 [exp] 985 / 0 AT4G21700 627 / 0.0 Protein of unknown function (DUF2921) (.1) Lus10030937 [exp] 481 / 1e-154 AT4G21700 504 / 3e-163 Protein of unknown function (DUF2921) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11145 [poplar] [flax] DUF2921 Protein of unknown function (DUF2921)
Representative CDS sequence Show only first row Show all	>Potri.011G052500.3 pacid=42781294 polypeptide=Potri.011G052500.3.p locus=Potri.011G052500 ID=Potri.011G052500.3.v4.1 annot-version=v4.1 ATGGAGCCGTCTCGCGCTCCTAAATCATCTCCATTTCTCGAAAACTCTACTTCCCGCAGATTCCCAACCACTCCCTTCCTCATTTCCCTCGCCTTTCTTC TCCTTACAACCTCGGCAACCTCTGCACCAACAATAAATTCCTTTAATTTCCTTGAATATTACGCCGAACACTGCAACAACGTAGTCCCTGAATCACCAAT CACAGGTACTCTCATAAACAATGCTTCTTTCTTTGAAGACAAAATCAAAATCCTTAATTTTGATGTCGCATACTTTACTGGTGGCTCACAAATCATACCC AAAAAAAGGGACTCTGATTCGGCTCCGAGTGTCCTCTCTTTTAAGCCAAAAAAATTCGATCTTCAGCAAACTGTGAACCCTTATGTGGTTTCCCTTCGAG GGTCTCTTAAATTTCGCTTTCCTGCTCGGTTTGATTGGAGTAATGTGACACGGGATCGCAGGAATTCGAAGAGAATCCGGTACCGCCCGCCGAGAACTCC AGTCAGGTCGAGGTATCTACTGTTTGAGCTATATGGGTTCTGGTCAATGAATACAGGGAAGCTGTGTATGGTGGGATCTGGTTCAGGTAACAGTGGTCTA AGTTCTTTAAATGCTGCTTTTAAGGCTAATTATCCTGTGGGTATTAGTGACTTTAGTGGCTTGATTAATGGGGTTTTGGAAAGTTTGGATTTTCAGGATA GTTATTTTGAGCAGGTTTCGATTTTGGGCATTCCTCATTTTGGTGAATACAAGTATACATTGGTAGATAAAGAGAATGTGGATGTGGGTTTTAGTGGAAC TTATGATAGTGTCGGGGGGAGAGAGAATTTGCCTATCGAATCGGTCGATAGAAGTATGTGTTTAAATGAAATGTATAGGCATGCTAGGATATTGGAATTG GAGTATGGGAGTGATTGTAGTGGTGATAATGGTGGTAAATGTAATCCTCTTAGTGGGAGTTCTGGGGTTTTGCCGAAGATTATGACAATTCAGGGAATTA GATGTGACCATGAGCGTGGGCGTGAAGCTCGGGTTTTGATTGGGTTTTCAGATTCTGCCGTTGTTAATGTTTATGGACCTTATGGCTCTGAAAGAGTTTT TGATCCTTATACAACACTAATTGGCGAGGGGGTCTGGGATGAGAAGAGGAATAGACTATTTGTGGTTGCATGTCGTGTCTTGAATTTTAATGATTCATCA GCTAATGCTACTGTTGGTGATTGCTCGATTCAATTGACCTTGCGGTTCCCCAGAACCTTGACAATTAGAGATCAGAGTGTTGTAGTGGGGCAAATTTATA GCAACAAAACTGTGAATGACACGAGCTACTTTCCTGGAATTGGGTTTCATGGTTCTGAGTTTCGGACAAGGCGACTTCGAGGTCTGGCTTATGAGTATAC TATGCTTGACAAGGTGCATAAATCTTGTGCAGAAAAGAAGTCCATGAAAGGTAAAGGAAAGACATACCCACATGGTTATTCATCTGACATGCGGTTTGAT ATGTTAGTGAGAAATGGAAAAGGACACGTAGCACAGGGCTTTTCAACCCCATTGTTTGTGGGTTATCAGCTGTTTGAGCCATATCCAATGACCAACAACT ACAGTGGTCATCTAAATATTAGCTACAAGATGTTGTTCACGGGTATGCTTCCATCAAATGACTCTGGCACAATTTCAGCTGAAGGAACGTACGATGATGA GAATGGGGTTCTATGCATGATAGGTTGTCGGCATTTGATATCACGTATGGGAAATTCAATGAAAAATGATTCAACTGACTGTGAGATTCTTGTCAATGTC CAGTTTTCTCCACTGAATGGAAAGGGTCACGGTAACATCAAAGGAACCATTGAAAGCGTAAGGAAAAACTCAGACCCTCTTCACTTTGAGAAGCTTGAGA TATCTTCAAACTCGATTTATAGGCACCAAGCTGCGGAATCCATTTGGAGAATGGATATGGAAATAACCATGGTTTTGATTTCTAGTACTCTTGCTTGTAT CCTTGTGGGTTTGCAGCTCTATCATGTGAAAAGGCATCCTGATGTGCTAACCTTCATTTCTTTTATGATGCTTCTTGTTCTTACTCTGGGTCATATGATA CCTCTATTGTTAAATTTCGAAGCCTTGTTTTTGTCAAACCGTAACCAACAAAATGTTTTTCTTGAGAGTGGTGGATGGCTTGAAGTCAATGAAGTAGCAG TAAGGGTGGTAAAGATGGTAGCCTTTCTTTTGATATTCCGGCTTCTCCAACTCACTTGGTCTGCTAGGCCGAGCGATGGAAGCAACAAAAACGTGTGGAT TTCTGAGAAAAGAGTTCTTTATTTGTCTTTACCGATGTACATTGTTGGTGGACTCATTGCATGGTATGTGCATCACTGGAAAAACACTTCTAGGAGCCCA CACCTGCTACAAGGTCATAAGGTTTACCAACAACATTATCCCTGGACAGATCTTAAATCATATGCTGGTTTGGTTCTGGATGGTTTCTTACTCCCACAGA TAATGTTTAACTTATTCTTGAACTCTAGTGAAAAAGCTCTTGCCCCTTCGTTTTATGCTGGGACAACTGTTATTCGTTTGCTGCCTCATGCATATGACCT TTACAGGGCTCACAGTTCCACATGGTACCTTGATTTGTCATACTTGTATGCAAATCACACATATGATTTTTATTCTACTGCATGGGACATCATAATCCCT TTGTGTGGCCTGTTGTTTGCTATCCTCATTTACTTACAGCAGCAATTTGGTGGTCGTTGCTTTCTTCCAAAGAGATTTAGAGGGGGTCCTGCATATGAAA AGGTTCCCATAGTTAGCAACGAGGAACTGCAAGAGATAACAACTCATTGA
AA sequence Show only first row Show all	>Potri.011G052500.3 pacid=42781294 polypeptide=Potri.011G052500.3.p locus=Potri.011G052500 ID=Potri.011G052500.3.v4.1 annot-version=v4.1 MEPSRAPKSSPFLENSTSRRFPTTPFLISLAFLLLTTSATSAPTINSFNFLEYYAEHCNNVVPESPITGTLINNASFFEDKIKILNFDVAYFTGGSQIIP KKRDSDSAPSVLSFKPKKFDLQQTVNPYVVSLRGSLKFRFPARFDWSNVTRDRRNSKRIRYRPPRTPVRSRYLLFELYGFWSMNTGKLCMVGSGSGNSGL SSLNAAFKANYPVGISDFSGLINGVLESLDFQDSYFEQVSILGIPHFGEYKYTLVDKENVDVGFSGTYDSVGGRENLPIESVDRSMCLNEMYRHARILEL EYGSDCSGDNGGKCNPLSGSSGVLPKIMTIQGIRCDHERGREARVLIGFSDSAVVNVYGPYGSERVFDPYTTLIGEGVWDEKRNRLFVVACRVLNFNDSS ANATVGDCSIQLTLRFPRTLTIRDQSVVVGQIYSNKTVNDTSYFPGIGFHGSEFRTRRLRGLAYEYTMLDKVHKSCAEKKSMKGKGKTYPHGYSSDMRFD MLVRNGKGHVAQGFSTPLFVGYQLFEPYPMTNNYSGHLNISYKMLFTGMLPSNDSGTISAEGTYDDENGVLCMIGCRHLISRMGNSMKNDSTDCEILVNV QFSPLNGKGHGNIKGTIESVRKNSDPLHFEKLEISSNSIYRHQAAESIWRMDMEITMVLISSTLACILVGLQLYHVKRHPDVLTFISFMMLLVLTLGHMI PLLLNFEALFLSNRNQQNVFLESGGWLEVNEVAVRVVKMVAFLLIFRLLQLTWSARPSDGSNKNVWISEKRVLYLSLPMYIVGGLIAWYVHHWKNTSRSP HLLQGHKVYQQHYPWTDLKSYAGLVLDGFLLPQIMFNLFLNSSEKALAPSFYAGTTVIRLLPHAYDLYRAHSSTWYLDLSYLYANHTYDFYSTAWDIIIP LCGLLFAILIYLQQQFGGRCFLPKRFRGGPAYEKVPIVSNEELQEITTH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21700			Protein of unknown function (D...		Potri.011G052500 [exp]	0	1
AT4G35140			Transducin/WD40 repeat-like su...		Potri.004G178700 [exp]	2.00	0.8170
AT3G43220			Phosphoinositide phosphatase f...		Potri.018G063700 [exp]	7.07	0.7799
					Potri.010G148450 [exp]	7.14	0.7847
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Potri.004G174800 [exp]	11.74	0.8178	BGAL11.1
AT1G65950			Protein kinase superfamily pro...		Potri.004G075100 [exp]	14.49	0.7890
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.003G110100 [exp]	24.00	0.7911
AT2G18193			P-loop containing nucleoside t...		Potri.007G020600 [exp]	24.06	0.8105
AT2G24130			Leucine-rich receptor-like pro...		Potri.001G042500 [exp]	26.45	0.8064
AT1G22930			T-complex protein 11 (.1.2)		Potri.013G105300 [exp]	28.00	0.8056
AT5G63610		HEN3, CDKE;1, C...	HUA ENHANCER 3, cyclin-depende...		Potri.001G088000 [exp]	29.12	0.7093	Pt-HEN3.1

Compare expression of checked genes

Potri.011G052500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.