Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58610 990 / 0 ketol-acid reductoisomerase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G043700 [exp] 1072 / 0 AT3G58610 981 / 0.0 ketol-acid reductoisomerase (.1.2.3) Potri.014G055100 [exp] 380 / 6e-130 AT3G58610 340 / 2e-114 ketol-acid reductoisomerase (.1.2.3) Potri.019G089532 [exp] 200 / 3e-58 AT3G58610 164 / 2e-45 ketol-acid reductoisomerase (.1.2.3) Potri.013G117532 [exp] 156 / 2e-44 AT3G58610 0 / 1 ketol-acid reductoisomerase (.1.2.3) Potri.019G089366 [exp] 131 / 1e-36 AT3G58610 154 / 7e-46 ketol-acid reductoisomerase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011918 [exp] 963 / 0 AT3G58610 980 / 0.0 ketol-acid reductoisomerase (.1.2.3) Lus10022849 [exp] 960 / 0 AT3G58610 978 / 0.0 ketol-acid reductoisomerase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [poplar] [flax] 6PGD_C PF01450 [poplar] [flax] IlvC Acetohydroxy acid isomeroreductase, catalytic domain CL0063 [poplar] [flax] NADP_Rossmann PF07991 [poplar] [flax] IlvN Acetohydroxy acid isomeroreductase, NADPH-binding domain
Representative CDS sequence Show only first row Show all	>Potri.011G052700.1 pacid=42781236 polypeptide=Potri.011G052700.1.p locus=Potri.011G052700 ID=Potri.011G052700.1.v4.1 annot-version=v4.1 ATGGCGGCGGCTACATCCTTCTCCAATACCCTCACCACTCCAGCCCCTTCAAAAACCCTAAAGCCTGCATCTTCAAGATCGCTGCTATGTAACAGCAATT TAGGGTTTTCATCATCACTCTCTTCTAAGACCTTCAAACCTCTCAAAGCCAGCAGTGGTAACATCTCTGCTGGAGTTTTGGGTGCTAAGATGGTCTCTTC GGTTCCCAGTGTGAAACCCATGATCTCTCTTGATTTTGAGACCTCTGTGTTTAAGAAGGAGAAGGTCTCTCTTGCTGGTCACGATGAGTACATTGTGAGA GGAGGGAGGGATTTGTTCCACCTGCTGCCTGATGCATTTAAGGGGATTAAGCAGATTGGCGTTATCGGATGGGGTTCCCAGGGTCCTGCTCAAGCTCAGA ATCTAAGGGATTCTCTTGCTGAAGCAAAGTCTGATATTAAAGTCAAGATTGGACTGAGGAAGGGCTCTCGTTCCTTTGCTGAAGCTCGTGGTGCTGGTTT TACAGAAGAAAATGGGACTCTAGGTGATATATGGGAAACCGTTTCTGGCAGCGATCTAGTATTGCTACTGATTTCTGATGCTGCACAGGCAGATAACTAT GAGAAAATCTTCTCTCACATGAAGCCAAACAGCATTCTTGGGCTTTCCCATGGATTTCTTCTTGGGCATTTGCAGTCAACGGGACTTGATTTTCCAAAGA ACATCAGTGTCATTGCTGTGTGCCCCAAGGGAATGGGTCCTTCTGTGAGGAGACTCTATGTTCAAGGCAAAGAGGTCAATGGTGCTGGAATTAATTCCAG TTTCGCAGTCCACCAGGATGTTGATGGTAGAGCCACTGATGTTGCCTTGGGATGGTCTGTTGCCCTTGGTTCACCTTTCACATTTGCCACTACACTAGAG CAGGAATACAAGAGTGATATCTTTGGGGAGAGGGGCATTTTGCTTGGTGCTGTTCATGGAATTGTGGAGTCCTTGTTTAGACGGTACACTGAAAATGGAA TGAGTGAAGATGAGGCCTACAAGAATACTGTTGAGTGCATTACTGGAACCATATCAAGGACCATATCAACCAAGGGCATGCTGGCTGTTTACAATTCCTT GTCTGCAGAAGGCAAAAAGGAATTCGAGACTGCTTACAGTGCCTCGTTTTATCCCTGCATGGACATCTTGTATGAGTGCTATGAAGATGTAGCCTCTGGA AGTGAGATTCGCAGTGTTGTCCTGGCTGGACGTCGCTTTTATGAAAAGGAAGGTCTACCAGCTTTTCCAATGGGTAAAATTGATCAGACACGCATGTGGA AGGTTGGTGAGCGAGTCCGGGCTGCCCGGCCAGCTGGGGACTTAGGTCCATTGCATCCATTCACTGCTGGTGTCTATGTGGCACTAATGATGGCTCAGAT TGAAATATTGAGGAAGAAAGGCCATTCTTACTCTGAGATCATTAATGAAAGTCTGATTGAATCTGTGGATTCCTTGAATCCATTTATGCATGCCCGTGGA GTTTCTTTTATGGTTGATAACTGCTCAACCACAGCAAGATTGGGATCAAGGAAATGGGCTCCTCGTTTTGACTACATCCTCACCCAGCAGGCCTTGGTAG CGGTAGACAACAGTACTCCCATCAACCGTGACCTCATCAGCAACTTCTTTTCAGATCCAGTGCATGGAGCCGTTGAAGTCTGTGCCCAATTAAGACCCAC AGTTGACATTTCCGTGCCAGCAGATGCTGACTTTGTGCGACCTGAGCTCCGCCAATCTAGCAACTGA
AA sequence Show only first row Show all	>Potri.011G052700.1 pacid=42781236 polypeptide=Potri.011G052700.1.p locus=Potri.011G052700 ID=Potri.011G052700.1.v4.1 annot-version=v4.1 MAAATSFSNTLTTPAPSKTLKPASSRSLLCNSNLGFSSSLSSKTFKPLKASSGNISAGVLGAKMVSSVPSVKPMISLDFETSVFKKEKVSLAGHDEYIVR GGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIKVKIGLRKGSRSFAEARGAGFTEENGTLGDIWETVSGSDLVLLLISDAAQADNY EKIFSHMKPNSILGLSHGFLLGHLQSTGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLE QEYKSDIFGERGILLGAVHGIVESLFRRYTENGMSEDEAYKNTVECITGTISRTISTKGMLAVYNSLSAEGKKEFETAYSASFYPCMDILYECYEDVASG SEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRAARPAGDLGPLHPFTAGVYVALMMAQIEILRKKGHSYSEIINESLIESVDSLNPFMHARG VSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNSTPINRDLISNFFSDPVHGAVEVCAQLRPTVDISVPADADFVRPELRQSSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58610			ketol-acid reductoisomerase (....		Potri.011G052700 [exp]	0	1
AT1G08125			S-adenosyl-L-methionine-depend...		Potri.009G006800 [exp]	1.41	0.8606
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Potri.001G207000 [exp]	3.31	0.8616
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Potri.002G226000 [exp]	11.13	0.8416
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Potri.003G008300 [exp]	11.48	0.7966
AT1G18450		ATARP4	actin-related protein 4 (.1)		Potri.012G061300 [exp]	11.74	0.8497	ARP901,ARP4.2
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Potri.015G077500 [exp]	12.36	0.8199
AT1G78910			Pseudouridine synthase family ...		Potri.004G228200 [exp]	19.05	0.7450
AT2G43770			Transducin/WD40 repeat-like su...		Potri.019G096900 [exp]	20.49	0.8174
AT4G14000			Putative methyltransferase fam...		Potri.001G321100 [exp]	21.79	0.8406
AT1G02870			unknown protein		Potri.014G130400 [exp]	22.00	0.8029

Compare expression of checked genes

Potri.011G052700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.