Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15358 159 / 7e-51 unknown protein AT1G53035 158 / 2e-50 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G044000 [exp] 223 / 5e-76 AT1G53035 182 / 4e-60 unknown protein Potri.013G130100 [exp] 177 / 4e-58 AT1G53035 169 / 9e-55 unknown protein Potri.001G399900 [exp] 171 / 2e-55 AT1G53035 182 / 6e-60 unknown protein Potri.011G119200 [exp] 160 / 2e-51 AT1G53035 172 / 4e-56 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015439 [exp] 201 / 3e-67 AT3G15358 190 / 3e-63 unknown protein Lus10011176 [exp] 197 / 6e-66 AT3G15358 191 / 1e-63 unknown protein Lus10039835 [exp] 150 / 4e-47 AT1G53035 172 / 7e-56 unknown protein Lus10018600 [exp] 147 / 2e-46 AT1G53035 166 / 1e-53 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G052900.1 pacid=42780519 polypeptide=Potri.011G052900.1.p locus=Potri.011G052900 ID=Potri.011G052900.1.v4.1 annot-version=v4.1 ATGACATCATCTTCGTCAGCTTTCTCTACGATCTGCATCCTACACTCCCTGATAGCCATAACAAGTGGAACACTCATGATGTTCCAAATGAAGGAAATCT ACACCTTCACACATGGTAATGAAACTGCCACAAAGCTGATGGGGTCGACCCCACACGACCAGCTCCTGATCCGGACCTCTGATTCATTTTCCGGGTTGCT TCTGTTTGATATCGGGTTCTTGATATTCATGGTTTCCTTTGTCAAGGATAGAGAGTTTCAATCTTTCTTTGCAAAGGGGTGTGCTGTTCTTCATGTTTTC ATGGTTCTTTGGAGGGTTAATTTTGAGAGGAGAGTTGAGGTGTTGGCTTGGGTTTGTTTGAGACAGACAGTTGGTGATATCTTATTGGCTCTCTCTTGGG TTTTATTTCTTGTTTGTTCTTGGAGAGAGAAGTACGATTAG
AA sequence Show only first row Show all	>Potri.011G052900.1 pacid=42780519 polypeptide=Potri.011G052900.1.p locus=Potri.011G052900 ID=Potri.011G052900.1.v4.1 annot-version=v4.1 MTSSSSAFSTICILHSLIAITSGTLMMFQMKEIYTFTHGNETATKLMGSTPHDQLLIRTSDSFSGLLLFDIGFLIFMVSFVKDREFQSFFAKGCAVLHVF MVLWRVNFERRVEVLAWVCLRQTVGDILLALSWVLFLVCSWREKYD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15358			unknown protein		Potri.011G052900 [exp]	0	1
AT3G10210			SEC14 cytosolic factor family ...		Potri.006G043166 [exp]	12.16	0.7640
AT3G47160			RING/U-box superfamily protein...		Potri.001G250800 [exp]	12.36	0.7275
AT1G11360			Adenine nucleotide alpha hydro...		Potri.011G039800 [exp]	17.14	0.7514
AT5G23710			DNA binding;DNA-directed RNA p...		Potri.003G033600 [exp]	21.35	0.6817
AT5G25280			serine-rich protein-related (....		Potri.006G060800 [exp]	22.80	0.7356
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Potri.007G029400 [exp]	28.19	0.7334
AT5G18640			alpha/beta-Hydrolases superfam...		Potri.010G019500 [exp]	31.46	0.7533
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Potri.008G203500 [exp]	33.22	0.7430
AT4G35750			SEC14 cytosolic factor family ...		Potri.005G246800 [exp]	35.32	0.6808
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Potri.004G047100 [exp]	37.10	0.7107

Compare expression of checked genes

Potri.011G052900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.