Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04960 736 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G28350 579 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 460 / 2e-153 RLK receptor lectin kinase (.1) AT4G02410 448 / 1e-148 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 440 / 1e-145 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 435 / 1e-143 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 431 / 4e-142 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 431 / 6e-142 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59700 407 / 3e-133 LECRK1, ATHLECRK LECTIN-RECEPTOR KINASE 1, lectin-receptor kinase (.1) AT5G60300 406 / 7e-132 LecRK-I.9 lectin receptor kinase I.9, Concanavalin A-like lectin protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G053200 [exp] 1157 / 0 AT4G04960 716 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.004G044200 [exp] 1017 / 0 AT4G04960 756 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 459 / 4e-153 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088680 [exp] 459 / 5e-153 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088600 [exp] 458 / 9e-153 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 454 / 5e-151 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.009G035500 [exp] 451 / 8e-150 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088400 [exp] 449 / 5e-149 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.009G035400 [exp] 449 / 6e-149 AT3G53810 629 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025441 [exp] 740 / 0 AT4G04960 763 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10015313 [exp] 738 / 0 AT4G04960 761 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10018602 [exp] 605 / 0 AT4G04960 642 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 454 / 6e-151 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 434 / 5e-143 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 432 / 2e-142 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10008597 [exp] 431 / 6e-142 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 429 / 3e-141 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 429 / 4e-141 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 428 / 8e-141 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.011G053100.1 pacid=42781908 polypeptide=Potri.011G053100.1.p locus=Potri.011G053100 ID=Potri.011G053100.1.v4.1 annot-version=v4.1 ATGAAGAAATTCAACAGCAAGCTTGATCTTGTCTCGCTTTTACTTCCTATAATCCTGTTTCTGCAACCCATATCGGCTATTGATTTTGTCTTCAATGGAT TCAATTCCTCTAGTGTTTCACTCTATGGCTCAGCCATCATTGAATCTCGCATTCTTACACTTACAAATCAAACATCTTTCCAAATTGGCCGTGCTTTGTT CCCAACAAAGATACCAACCAAAGCTCCAAATTCTTCATTTGTGTATCCATTTTCCACTTCTTTTATTTTTGCTATGGCCCCTTACAAGAATGTTCTTCCT GGGCATGGTCTGGTTTTTCTTTTTGTGCCCTTTACAGGCATTCAAGGCTCTAGTTCAGCTCAAAATTTAGGCTTTCTGAATTTTACGAACGGTAACAGTT CAGATAATCATATGCTTGGCATCGAGTTTGATGTGTTCGCAAATGAAGAATTCAGTGATATGAATGATAATCATGTTGGAATAGATGTAAATTCACTTAC ATCAATTGAAGCAGCAGATGCAGGCTATTGGCCTGATAATTCAAGGAGCAGCAGCAATGGGAACACCAGTGATGAGGATAGTAATTCTTTTAAGGAACAG GATCTAAATAATGGTAAAAACTACCAAGTTTGGATTGACTATGAAGATTCTATGATTAATGTTACTATGGCTCCGGCCGGCATGAAAAGGCCTACCAGGC CTTTATTGAATGTGTCTCTTAATCTATCTGATGTTTTTGAGGATGAGATGTATGTGGGATTCACTTCTTCAACCGGACAACTTGTTGAAAGTCACAAGAT TTTGGCATGGAGCTTTAGCAATTCCAATTTTTCGTTGAGTGAGAGGTTAATCACTACTGGGTTGCCATCTTTTGTGCTTCCAAAAGATCCATTTTATCGG TCTAAAGTGTTCATTGCAGGAGCCACAGTGGGAGGGGTCCTTCTTGTTGTTTCTGCTGCTACAATTATATGGTTTTTGATTAAGAGAAGACAAAGGAAAG CAAGGGAGAGAGAGGAAATGGAGGATTGGGAATTGGAGTACTGGCCACATCGAATTAGGTATCAAGAAATCGAGGCAGCAACGAAAGGATTCAGTGAAGA AAATGTTATTGGAATCGGAGGAAATGGAAAGGTCTATAAGGGTGTTTTACCAGGAGGGACAGAGATTGCAGTGAAGCGCATTTCACATGAAAATGATGGG ATGAGGGAGTTTTTAGCTGAAATTTCAAGTCTTGGAAGGTTGAAGCATAGGAGTTTGGTGGGGCTGAGAGGTTGGTGCAAGAGAGAAAGAGGAGTCTTCA TGTTGGTATATGACTACATGGAAAATGGGAGTTTGGAGAAGAGGGTGTTCGATTGTGATGAGAGTAAAATGTTGAGCTGTGAAGAGAGAATAAGAATTTT GAAAGATGTGGCTTCTGCATTATTGTATCTGCACGAGGGATGGGATTCTCAAGTCCTACACAGAGACATTAAGGCCAGCAACGTGTTACTTGACAAGGAT ATGAATGGAAGGTTAGGTGATTTTGGATTGGCTCGAGTGCACGGGCATGGTCAAGTGCCTAGCACCACGCGGGTGGTTGGAACCATAGGATACATGGCAC CTGAGGTGGTTCGAAGTGGAAGAGCCTCAGCTCAAACCGACGTGTTCGGTTTTGGGGTCTTGATTTTGGAGGTCATGTGTGGAAGGAGGCCTATAGAAGA AGGGCAGCCACCTTTGTTAGAATCGGTTTGGCAGTTGATGATGCAAGGGCAGTCACTTTATGCCTTGGATGAGCGACTAAAGGCTAGAGGAGAACAATTT GACGAAGGAGAAGTAGAGAGAATGCTTCATCTAGGCTTATTGTGTGCATATCCTGACTCTAAAGCGCGGCCGACAATGAGGCAAGTAGTGAAGGTCATGG AGGGCAATAATGAGCTTAGTGAGATTGAAAGTGAGGATATGGATGCATGTTTGCTACAACAGATGAAGTCTAAGGATTTTTGGTCGAGTTATTCTCAAAG TTCTAGCCATGGATCGCACCCAACTTTTGATGAAATTAGACGACACCACTCATCTTCTATGTCTTTATCTTGGAGCAATACTATAGTGGAGGGTAGGTGA
AA sequence Show only first row Show all	>Potri.011G053100.1 pacid=42781908 polypeptide=Potri.011G053100.1.p locus=Potri.011G053100 ID=Potri.011G053100.1.v4.1 annot-version=v4.1 MKKFNSKLDLVSLLLPIILFLQPISAIDFVFNGFNSSSVSLYGSAIIESRILTLTNQTSFQIGRALFPTKIPTKAPNSSFVYPFSTSFIFAMAPYKNVLP GHGLVFLFVPFTGIQGSSSAQNLGFLNFTNGNSSDNHMLGIEFDVFANEEFSDMNDNHVGIDVNSLTSIEAADAGYWPDNSRSSSNGNTSDEDSNSFKEQ DLNNGKNYQVWIDYEDSMINVTMAPAGMKRPTRPLLNVSLNLSDVFEDEMYVGFTSSTGQLVESHKILAWSFSNSNFSLSERLITTGLPSFVLPKDPFYR SKVFIAGATVGGVLLVVSAATIIWFLIKRRQRKAREREEMEDWELEYWPHRIRYQEIEAATKGFSEENVIGIGGNGKVYKGVLPGGTEIAVKRISHENDG MREFLAEISSLGRLKHRSLVGLRGWCKRERGVFMLVYDYMENGSLEKRVFDCDESKMLSCEERIRILKDVASALLYLHEGWDSQVLHRDIKASNVLLDKD MNGRLGDFGLARVHGHGQVPSTTRVVGTIGYMAPEVVRSGRASAQTDVFGFGVLILEVMCGRRPIEEGQPPLLESVWQLMMQGQSLYALDERLKARGEQF DEGEVERMLHLGLLCAYPDSKARPTMRQVVKVMEGNNELSEIESEDMDACLLQQMKSKDFWSSYSQSSSHGSHPTFDEIRRHHSSSMSLSWSNTIVEGR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04960			Concanavalin A-like lectin pro...		Potri.011G053100 [exp]	0	1
AT4G04960			Concanavalin A-like lectin pro...		Potri.011G053200 [exp]	1.00	0.9374
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.005G040200 [exp]	2.44	0.8372
AT2G17760			Eukaryotic aspartyl protease f...		Potri.005G108700 [exp]	3.00	0.8290
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Potri.001G124000 [exp]	6.00	0.7709
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Potri.004G159300 [exp]	6.92	0.7563
AT3G12020			P-loop containing nucleoside t...		Potri.006G194900 [exp]	7.48	0.8253
AT5G11070			unknown protein		Potri.003G070750 [exp]	8.94	0.8141
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Potri.002G132900 [exp]	14.42	0.7859
AT4G16380			Heavy metal transport/detoxifi...		Potri.016G006700 [exp]	19.59	0.7479
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.006G087100 [exp]	20.56	0.7819	LAC110b

Compare expression of checked genes

Potri.011G053100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.