Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04960 717 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G28350 566 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 455 / 2e-151 RLK receptor lectin kinase (.1) AT4G02410 448 / 2e-148 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 440 / 3e-145 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 426 / 4e-140 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 424 / 3e-139 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 417 / 1e-136 Concanavalin A-like lectin protein kinase family protein (.1) AT1G15530 397 / 3e-129 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60300 399 / 5e-129 LecRK-I.9 lectin receptor kinase I.9, Concanavalin A-like lectin protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G053100 [exp] 1144 / 0 AT4G04960 735 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.004G044200 [exp] 1027 / 0 AT4G04960 756 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 456 / 1e-151 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088680 [exp] 454 / 8e-151 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088600 [exp] 454 / 9e-151 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.009G035500 [exp] 445 / 2e-147 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035400 [exp] 444 / 4e-147 AT3G53810 629 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088400 [exp] 444 / 5e-147 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.016G101000 [exp] 443 / 2e-146 AT3G55550 704 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015313 [exp] 719 / 0 AT4G04960 761 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10025441 [exp] 718 / 0 AT4G04960 763 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10018602 [exp] 602 / 0 AT4G04960 642 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 448 / 2e-148 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 431 / 7e-142 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 427 / 3e-140 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 426 / 7e-140 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 425 / 2e-139 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040276 [exp] 424 / 3e-139 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 424 / 4e-139 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.011G053200.1 pacid=42780741 polypeptide=Potri.011G053200.1.p locus=Potri.011G053200 ID=Potri.011G053200.1.v4.1 annot-version=v4.1 ATGAAAAACACCTTCCTTTCTCTTTCTCTCCTTGCTTCTTGGATTGAAATGAAGAAATTCAACAACAAGCTTGATCTTGTCTTGCTTCTACTTCCTATAA TCCTGTTTTTGCAACCCATATCGGCTATTGACTTTGTCTTCAATGGATTCAATTCCTCTAGTGTTTCACTCTATGGCTCTGCCATCATTGAATCTCGCAT TCTTACACTTACAAATCAAACATCTTTCCAAATTGGCCGTGCTTTGTACCCAACAAAGATACCAACCAAAGCTCCAAATTCTTCATTTGTGTATCCATTT TCCACTTCTTTTATTTTTGCTATGGTCCCTTACAAGAATGTTCTTCCTGGGCATGGCCTGGCTTTTCTTTTTGTGCCCTTTACAAGCATTCAAAGCTCTA TTTCAGCTCAATATTTAGGCTTTCTGAATCGTACGAACGGTAACCGTTCAGATGATCATCTGCTTGGCATCGAGTTTGATGTGTTCGCAAATGAAGAATT CAGTGATATGAATGACAATCATGTTGGAATAGATGTAAATACACTTACATCAATTAAAGCAGCAGATGCAGGCTATTGGCCTGATAATTCAAGGAGCAGC AGCAATGAGAACACCAGTGATGAGGATAGTAATTCTTTCAAGGAACAGGATCTAAATAATGGTAAAAACTACCAAGTTTGGATTGACTATGAAGATTCTA TAATTAATGTTACTATGGCTCCGGCCGGCATGAAAAGGCCTACCAGGCCTTTATTGAATGTGTCTCTTAATCTATCTGATGTTTTTGAGGATGAGATGTA TGTGGGATTCACTTCTTCAACCGGACTACTTGTTGAAAATCACAAGATTTTGGCATGGAGCTTTAGCAATTCCAATTTTTCGTTGAGTGAGAGGTTAATC ACTACTGGGTTGCCATCGTTCGTTCTTCCAAAAGATCCATTTTATCGGTCTAAAGTGTTCATTGCAGGAGCCACAGTGGGAGGGGTCCTTCTTGTTGTTT CTGCTGCTACAATTATATGGTTTTTGATTAAGAGAAGACAAAGGAAAGCAAGGGAGAGAGAGGAAATGGAGGATTGGGAATTGGAGTACTGGCCACATCA AGTTAGGTATCAAGAAATCGAGGCAGCAACAAAAGGATTCAGTGAAGAAAATGTTATTGGAATCGGAGGAAATGGAAAGGTCTATAAGGGTGTTTTACCA GGAGGGACAGAGATTGCAGTGAAGCGCATTTCACATGAAAATGATGGGATGAGGGAGTTTTTAGCTGAAATTTCAAGTCTTGGAAGGTTGAAGCATAGGA GTTTGGTGGGGCTGAGAGGTTGGTGCAAGAGAGAAAGAGGAGTCTTCATGTTGGTATATGACTACATGGAAAATGGGAGTTTGGAGAAGAGGGTGTTCGA TTGTGATGAGAGTAAAATGTTGAGCTGTGAAGAGAGAATAAGAATTTTGAAAGATGTGGCTTCTGCATTATTGTATCTGCACGAGGGATGGGATTCTCAA GTCCTACACAGAGACATTAAGGCCAGCAACGTGTTACTTGACAAGGATATGAATGGAAGGTTAGGTGATTTTGGATTGGCTCGAGTGCACGGGCATGGTC AAGTGCCTAGCACCACGCGGGTGGTTGGAACCATAGGATACATGGCACCTGAGGTGGTTCGAAGTGGAAGAGCCTCAGCTCGAACCGATGTGTTTGGTTT TGGGGTCTTGATTTTGGAGGTCATGTGTGGAAGGAGGCCTATAGAAGAAGGGCAGCCACCTTTGTTAGAATCGGTTTGGCAGTTGATGATGCAAGGGCAG TCACTTTATGCCTTGGATGAGCGACTAAAGGCTAGAGGAGAACAATTTGACGAAGGAGAAGTAGAGAGAATGCTTCATCTAGGCTTATTGTGTGCATATC CTGACTCTAAAGGGCGGCCGACAATGAGGCAAGTAGTGAAGGTCATGGAGGGCAATAATGAGCTTAGTGAGATTGAAAGTGAGGATCTGGATGCATGTTT GCTACAACAGATGAAGTCTACGGATTTGTGGTCGAGTCATTCTAGCCATGGATCGCACCCAACTTTTGATGAAATTAGACGACACCACTCATCTTCTATG TCTTTATCTTGGAGCAATACTACTGTGGAGGGTAGGTGA
AA sequence Show only first row Show all	>Potri.011G053200.1 pacid=42780741 polypeptide=Potri.011G053200.1.p locus=Potri.011G053200 ID=Potri.011G053200.1.v4.1 annot-version=v4.1 MKNTFLSLSLLASWIEMKKFNNKLDLVLLLLPIILFLQPISAIDFVFNGFNSSSVSLYGSAIIESRILTLTNQTSFQIGRALYPTKIPTKAPNSSFVYPF STSFIFAMVPYKNVLPGHGLAFLFVPFTSIQSSISAQYLGFLNRTNGNRSDDHLLGIEFDVFANEEFSDMNDNHVGIDVNTLTSIKAADAGYWPDNSRSS SNENTSDEDSNSFKEQDLNNGKNYQVWIDYEDSIINVTMAPAGMKRPTRPLLNVSLNLSDVFEDEMYVGFTSSTGLLVENHKILAWSFSNSNFSLSERLI TTGLPSFVLPKDPFYRSKVFIAGATVGGVLLVVSAATIIWFLIKRRQRKAREREEMEDWELEYWPHQVRYQEIEAATKGFSEENVIGIGGNGKVYKGVLP GGTEIAVKRISHENDGMREFLAEISSLGRLKHRSLVGLRGWCKRERGVFMLVYDYMENGSLEKRVFDCDESKMLSCEERIRILKDVASALLYLHEGWDSQ VLHRDIKASNVLLDKDMNGRLGDFGLARVHGHGQVPSTTRVVGTIGYMAPEVVRSGRASARTDVFGFGVLILEVMCGRRPIEEGQPPLLESVWQLMMQGQ SLYALDERLKARGEQFDEGEVERMLHLGLLCAYPDSKGRPTMRQVVKVMEGNNELSEIESEDLDACLLQQMKSTDLWSSHSSHGSHPTFDEIRRHHSSSM SLSWSNTTVEGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04960			Concanavalin A-like lectin pro...		Potri.011G053200 [exp]	0	1
AT4G04960			Concanavalin A-like lectin pro...		Potri.011G053100 [exp]	1.00	0.9374
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.005G040200 [exp]	1.41	0.8716
AT3G12020			P-loop containing nucleoside t...		Potri.006G194900 [exp]	2.82	0.8621
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Potri.002G132900 [exp]	7.74	0.8413
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.017G032600 [exp]	8.83	0.8543
					Potri.007G093850 [exp]	13.26	0.7865
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Potri.002G178700 [exp]	13.85	0.8253
					Potri.001G213100 [exp]	14.42	0.7833
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.014G110400 [exp]	17.49	0.8013	GLP10.2
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Potri.005G116800 [exp]	19.18	0.8022

Compare expression of checked genes

Potri.011G053200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.