Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20970 160 / 1e-49 bHLH bHLH162 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G10586 71 / 3e-15 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G46510 54 / 4e-08 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT1G12540 45 / 1e-05 bHLH bHLH055 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G044400 [exp] 308 / 1e-107 AT4G20970 150 / 3e-46 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G129800 [exp] 160 / 7e-49 AT4G20970 109 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G099500 [exp] 157 / 5e-48 AT4G20970 83 / 2e-19 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G099400 [exp] 153 / 3e-46 AT4G20970 85 / 2e-20 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G074500 [exp] 145 / 8e-44 AT4G20970 117 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G034700 [exp] 140 / 2e-41 AT4G20970 104 / 5e-28 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G079100 [exp] 139 / 3e-41 AT4G20970 105 / 6e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G099300 [exp] 129 / 2e-37 AT4G20970 65 / 4e-13 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G132000 [exp] 68 / 1e-13 AT5G51790 154 / 6e-47 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011172 [exp] 189 / 5e-61 AT4G20970 144 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042128 [exp] 117 / 1e-32 AT4G20970 96 / 6e-25 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027394 [exp] 71 / 2e-14 AT5G51780 149 / 9e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031677 [exp] 66 / 8e-13 AT5G51780 143 / 2e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031675 [exp] 66 / 1e-12 AT4G25400 94 / 4e-24 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027396 [exp] 64 / 7e-12 AT4G25400 89 / 6e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027395 [exp] 54 / 1e-08 AT5G51780 138 / 9e-41 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031676 [exp] 48 / 2e-06 AT5G51780 119 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007049 [exp] 44 / 4e-05 AT1G62975 138 / 3e-39 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024812 [exp] 40 / 0.0007 AT1G49770 156 / 6e-46 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.011G053400.2 pacid=42781214 polypeptide=Potri.011G053400.2.p locus=Potri.011G053400 ID=Potri.011G053400.2.v4.1 annot-version=v4.1 ATGTATCATAAAAGCCTGCTCGATCCAATTAAACAACGACAAGCTAGCATCTCTAATTACATTGGTAGAGAGATCCATATCTGTATAGTAGTGCAGTCTT CTTCTTTTTTTTTTTTTTTGGAGGTAGTACTAGCTACTATCGCTGCAAGTACATTAATGGAGAACAACCCTAGTTCATCAAGAACTGACAGAAAAACCAT AGAAAGAAATAGGAGAAATCAAATGAAGGCACTCTATTCCCAGCTCAATTCTCTTGTACCCCATCAAAGCTCAAGGGAACCAGTACTGTCACTGCCTGAT CAACTAGATGAGGCTGCAAGTTACATAAAAAGGCTGCAGACTAACTTGGAGAGGATGAAGGAAAAGAAAGACAATTTAATGGGAACGGAAAGGAAAAATT ATGCAAGCATGAGTAGTTGTAATGGAACAACTACTGGGCTAAGATCACCACAAATTGAGATTCGCGAAACGGGTTCCACTTTAGAGGTTGTTTTGATAAC TGGCCTGGATGGTCAGTTCATGTTCAATGAGACCATTCGTGTGCTTCATGAAGAAGGAGCTGAGATTATTAATGCCAGTTTCTCTGTTGTGGAAGATACT GTATTCCATACAATACATTCTAAGGTTGGAGATTCTGCCCCCAGTAATGGAGCTGCAAGGATATCTCAGAGGCTAAACCAGTTTGTCCAAGATGATAATG CGCTTTAA
AA sequence Show only first row Show all	>Potri.011G053400.2 pacid=42781214 polypeptide=Potri.011G053400.2.p locus=Potri.011G053400 ID=Potri.011G053400.2.v4.1 annot-version=v4.1 MYHKSLLDPIKQRQASISNYIGREIHICIVVQSSSFFFFLEVVLATIAASTLMENNPSSSRTDRKTIERNRRNQMKALYSQLNSLVPHQSSREPVLSLPD QLDEAASYIKRLQTNLERMKEKKDNLMGTERKNYASMSSCNGTTTGLRSPQIEIRETGSTLEVVLITGLDGQFMFNETIRVLHEEGAEIINASFSVVEDT VFHTIHSKVGDSAPSNGAARISQRLNQFVQDDNAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.011G053400 [exp]	0	1
AT5G03820			GDSL-like Lipase/Acylhydrolase...		Potri.006G118300 [exp]	9.59	0.8201
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G034300 [exp]	17.23	0.7222
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Potri.010G100500 [exp]	19.89	0.7806
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Potri.006G125400 [exp]	22.24	0.6827	Pt-TKI1.2
AT5G67550			unknown protein		Potri.017G023400 [exp]	28.00	0.7364
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150300 [exp]	28.54	0.7566
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.005G014900 [exp]	39.11	0.6537
AT5G01210			HXXXD-type acyl-transferase fa...		Potri.006G097500 [exp]	44.83	0.7090
AT1G66760			MATE efflux family protein (.1...		Potri.017G120600 [exp]	51.76	0.7200
AT1G73325			Kunitz family trypsin and prot...		Potri.010G007500 [exp]	52.85	0.7183

Compare expression of checked genes

Potri.011G053400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.