Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20980 753 / 0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) AT5G44320 736 / 0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G044500 [exp] 893 / 0 AT4G20980 766 / 0.0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011171 [exp] 803 / 0 AT4G20980 919 / 0.0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) Lus10015435 [exp] 803 / 0 AT4G20980 917 / 0.0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0236 [poplar] [flax] PDDEXK PF05091 [poplar] [flax] eIF-3_zeta Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
Representative CDS sequence Show only first row Show all	>Potri.011G053500.1 pacid=42781664 polypeptide=Potri.011G053500.1.p locus=Potri.011G053500 ID=Potri.011G053500.1.v4.1 annot-version=v4.1 ATGGTAGACGGCTTCGAAGTAGGTGCCGTCCATTTCAACTCCGAAGGCTGGGGTCCGCCGGACGCCACCGTCACCCCAACCACCACCTCCACACTCCCTC TCAACGTCCCCTACGCTCCCTTCTCTCGCTCCGAAAAGCTCGGCCGAATCGCTGATTTCACTCGCATTCTTAACCCAGGCTCCGGTGAAGGCGGTGGTGG TGGCCGCAAAAGCGCTGCATCCGACTCCGTCTTCGACTTCACTGCCGATGATTCCTTCCCCTCTGGCGCTGACAACGACTCCACTTTTCGTCTCGTTGAC GGGAAGCCACCTCCAAGGCCGAAGTTTGGACCCAAGTGGCGGTTTAACCAGCACCACCGACCTCAGCTCCCGCAACGTCGCGATGAGGAAGTAGAGGCAA AGAAGCGAGAGGCGGAGAAAGAGAGGGCACGTAGGGATCGACTTTATTATCTTAACCGGTCCAACCAGAATCAGCAACGTAGGGAAGCGGCTGTGTTTAA GAGTTCTGTGGAAATCCAGACGGAATGGAATATGCTTGATAAGATTCCGTTTAGCATATTTACGAAACTGTCCTTCTCAGTCTCAGAACCGGAGGATATG ATTTTATGTGGTGGGCTAGAGTTTTACGATAAGAGTTTTGATAGAATTACCCCGAAGGCGGAACGGAGATTGGAAAGGTTTAAGAATAGGAATTTCTTTA AGGTAACTACTACTGATGATCCTGTTATTAGAAGATTAGCTAATGAAGATAAAGCTACTGTTTTTGCTACTGACAATATTTTAGCTACATTAATGTGTGC AACCCGGTCTGTTTATTCGTGGGATATCGTGGTTCAAAGGGTAGGAAATAAGTTGTTTTTTGATAAAAGAGATGGGTCTCAGCTTGATTTGTTGTCAGTT CATGAGACGTCACAGGAGCCTTTACCCGAGGCCGAGGATGATATAAATTCGGCATATTCATTGAGTGTTGAGGCTGCTTATATTAATCAGAACTTCTCGC AGCAAGTTTTGTTTAGGGATGGGAATAAGGTTTCGTTTGATGAGCCTAACCCCTTTGCCAATGAAGGGGAGGAGGTTGCATCTGTGGCTTATAGGTATAG GAGGTGGAAGTTGGATGATGACATGTATCTTGTTGCAAGGTGTGAGGTGCAGAGTGTTGTTGAGGTTAATAAGCAAAGGTCGTTTTTGACGTTGAATGCT CTTAATGAGTTTGATCCTAAGTATTCTGGTGTTGATTGGAGGCAGAAGTTGGAGACTCAAAGGGGTGCTGTTTTGGCTACCGAATTGAAGAATAATGCGA ATAAATTGACTAAATGGACTGCTCAAGCGTTGTTGGCTAATGCAGATATGATGAAGTTAGGATATGTTTCTAGGGTTCATCCAAGGGATCATTTCAATCA TGTGATTTTGGCTGTTGTTGGATATAAGCCTAGGGACTTTGCTTCTCAGATTAATTTGAATACCTCCAATATGTGGGGTATTGTGAAGAGTATTGTTGAC TTGTGTATGAAATTGAATGAGGGTAAGTATGTGCTGGTGAAAGACCCATCTAAACCACAAGTGAGGATTTATGAGGTTCCAGCTGATGCTTTTGAGAATG ATTATGTGGAGGAGCCTTTGCCTGAGGAGGAACAAGCTCAGCCTCCTGAGGAGAATGCCGAGAATACAGAGGCAAATGGGGTGACAAATGATGTGGAAGA TAAAGAGATTGGTGCTCAAGTTTGA
AA sequence Show only first row Show all	>Potri.011G053500.1 pacid=42781664 polypeptide=Potri.011G053500.1.p locus=Potri.011G053500 ID=Potri.011G053500.1.v4.1 annot-version=v4.1 MVDGFEVGAVHFNSEGWGPPDATVTPTTTSTLPLNVPYAPFSRSEKLGRIADFTRILNPGSGEGGGGGRKSAASDSVFDFTADDSFPSGADNDSTFRLVD GKPPPRPKFGPKWRFNQHHRPQLPQRRDEEVEAKKREAEKERARRDRLYYLNRSNQNQQRREAAVFKSSVEIQTEWNMLDKIPFSIFTKLSFSVSEPEDM ILCGGLEFYDKSFDRITPKAERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDNILATLMCATRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLSV HETSQEPLPEAEDDINSAYSLSVEAAYINQNFSQQVLFRDGNKVSFDEPNPFANEGEEVASVAYRYRRWKLDDDMYLVARCEVQSVVEVNKQRSFLTLNA LNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLTKWTAQALLANADMMKLGYVSRVHPRDHFNHVILAVVGYKPRDFASQINLNTSNMWGIVKSIVD LCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEEEQAQPPEENAENTEANGVTNDVEDKEIGAQV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20980			Eukaryotic translation initiat...		Potri.011G053500 [exp]	0	1
AT1G60770			Tetratricopeptide repeat (TPR)...		Potri.018G079600 [exp]	5.74	0.8380
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.015G097500 [exp]	7.21	0.8416
AT1G22030			unknown protein		Potri.002G090300 [exp]	24.24	0.8064
AT2G46180		GC4	golgin candidate 4 (.1)		Potri.014G091300 [exp]	26.98	0.8333
AT3G28917	ZF_HD	MIF2	mini zinc finger 2 (.1)		Potri.017G082701 [exp]	42.73	0.7525
AT2G30700			unknown protein		Potri.007G133800 [exp]	44.49	0.7917
AT2G30700			unknown protein		Potri.007G133733 [exp]	46.81	0.8192
AT5G36290			Uncharacterized protein family...		Potri.019G053400 [exp]	49.31	0.8088
AT1G21480			Exostosin family protein (.1.2...		Potri.005G187400 [exp]	53.70	0.8149
AT3G54290			unknown protein		Potri.008G019700 [exp]	53.85	0.8181

Compare expression of checked genes

Potri.011G053500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.