Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34700 139 / 6e-41 Pollen Ole e 1 allergen and extensin family protein (.1) AT1G28290 141 / 3e-40 AGP31 arabinogalactan protein 31 (.1.2) AT2G33790 129 / 2e-36 ATAGP30 arabinogalactan protein 30 (.1) AT5G05500 68 / 9e-14 MOP10 Pollen Ole e 1 allergen and extensin family protein (.1) AT2G47540 65 / 1e-12 Pollen Ole e 1 allergen and extensin family protein (.1) AT4G02270 49 / 3e-07 RHS13 root hair specific 13 (.1) AT1G78040 49 / 5e-07 Pollen Ole e 1 allergen and extensin family protein (.1.2) AT4G18596 48 / 9e-07 Pollen Ole e 1 allergen and extensin family protein (.1) AT5G45880 47 / 1e-06 Pollen Ole e 1 allergen and extensin family protein (.1) AT3G09925 44 / 2e-05 Pollen Ole e 1 allergen and extensin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G044700 [exp] 248 / 3e-83 AT2G34700 142 / 8e-43 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.010G185400 [exp] 77 / 3e-17 AT5G05500 166 / 8e-53 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.008G072000 [exp] 70 / 2e-14 AT5G05500 152 / 5e-47 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.002G201900 [exp] 55 / 5e-09 AT2G47540 160 / 1e-50 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.006G119100 [exp] 51 / 9e-08 AT3G09925 180 / 7e-58 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.002G201800 [exp] 46 / 8e-06 AT4G02270 118 / 1e-33 root hair specific 13 (.1) Potri.011G111300 [exp] 40 / 0.0003 AT1G29140 148 / 4e-46 Pollen Ole e 1 allergen and extensin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014013 [exp] 176 / 2e-54 AT2G34700 137 / 2e-40 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10015434 [exp] 172 / 6e-53 AT1G28290 135 / 1e-39 arabinogalactan protein 31 (.1.2) Lus10040948 [exp] 74 / 4e-16 AT5G05500 176 / 9e-57 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10009837 [exp] 74 / 9e-16 AT5G05500 171 / 1e-54 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10017440 [exp] 71 / 8e-15 AT5G05500 128 / 7e-38 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10007515 [exp] 62 / 1e-11 AT5G05500 127 / 3e-37 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10023887 [exp] 54 / 1e-08 AT3G09925 167 / 4e-53 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10005539 [exp] 48 / 2e-06 AT4G02270 103 / 1e-27 root hair specific 13 (.1) Lus10041926 [exp] 45 / 2e-05 AT4G02270 100 / 5e-26 root hair specific 13 (.1) Lus10026040 [exp] 42 / 9e-05 AT5G10130 159 / 3e-50 Pollen Ole e 1 allergen and extensin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [poplar] [flax] Transthyretin PF01190 [poplar] [flax] Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence Show only first row Show all	>Potri.011G053600.1 pacid=42780989 polypeptide=Potri.011G053600.1.p locus=Potri.011G053600 ID=Potri.011G053600.1.v4.1 annot-version=v4.1 ATGGGTTTTGTTATAGCTAAAGCTATTCTGACACTTCTCCTTTCTATGCTATGCTTCACTGTTTTTAGTGAAAAAGTTGAGCCAGCTGATCAACCTCTTC ACCATGGCTCTCACCATCACTACCCAACAGCAGCGCCAGTAAGTGAGCCACCGAGTCATGCACCTAGCCTAGCACCAGCCCCACACCTCCACCACCACCA CCACCATCACGGTCACTCACCAGCTCCTGCACCTGTTAACACTCCAGCACATGCACCGGTGCACCCGCCGAAGCCTCACTCTCCCCCATCAGTACCAGCT CACCCTCCCATGCACCCACACCCACACCCACACCCACACCCACGGAGTTATCACTTCCCTAGAAAGCTTGTAGCAGTCCAAGGTGTTGTTTACTGCAAAT CTTGCAACTATTCCGGGGTTGATACCTTCTTGGGAGCAAAGCCAGTTCCTGGTGCTACAGTAAAACTACAGTGCAATAATACCAAGTACCCACTAGAGGT GAAGGCCACAACCGACAAGAATGGTTACTTCCTCGCCAAAGCACCAGGGACTATCACCAACTATGGATTTCATAAGTGCAAGGTGTGGCTAGTCTCAGCA CCAAATACTGCATGCAGCAAGATCACTGATATCCATGGTGGGCTGGCTGGTGCGATCTTAAGGCCTGAGAAGAAGCCTTTCGTTGATGAAAAGAAGCGTG GATATGCTCTCTTCAGTGTTGGCCCTTTCGCTTTTGAGTCCAAATGCCCTCGTTAA
AA sequence Show only first row Show all	>Potri.011G053600.1 pacid=42780989 polypeptide=Potri.011G053600.1.p locus=Potri.011G053600 ID=Potri.011G053600.1.v4.1 annot-version=v4.1 MGFVIAKAILTLLLSMLCFTVFSEKVEPADQPLHHGSHHHYPTAAPVSEPPSHAPSLAPAPHLHHHHHHHGHSPAPAPVNTPAHAPVHPPKPHSPPSVPA HPPMHPHPHPHPHPRSYHFPRKLVAVQGVVYCKSCNYSGVDTFLGAKPVPGATVKLQCNNTKYPLEVKATTDKNGYFLAKAPGTITNYGFHKCKVWLVSA PNTACSKITDIHGGLAGAILRPEKKPFVDEKKRGYALFSVGPFAFESKCPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34700			Pollen Ole e 1 allergen and ex...		Potri.011G053600 [exp]	0	1
					Potri.016G013000 [exp]	1.41	0.8547
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Potri.005G233600 [exp]	2.82	0.8448
AT1G29980			Protein of unknown function, D...		Potri.011G087500 [exp]	4.47	0.8511
AT4G16447			unknown protein		Potri.014G165000 [exp]	5.00	0.7892
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Potri.017G076700 [exp]	5.47	0.8386	PtrTrxh2
AT3G58690			Protein kinase superfamily pro...		Potri.014G143100 [exp]	6.24	0.8505
AT2G33840			Tyrosyl-tRNA synthetase, class...		Potri.008G010201 [exp]	6.32	0.8015
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Potri.010G202500 [exp]	8.12	0.7738	Pt-EXPA4.2,+E2EXPA15
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.014G027100 [exp]	8.36	0.8448	Pt-HSFB4.2
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Potri.001G141400 [exp]	9.38	0.8228

Compare expression of checked genes

Potri.011G053600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.