Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28280 213 / 6e-69 VQ motif-containing protein (.1.2) AT2G33780 126 / 1e-35 VQ motif-containing protein (.1) AT3G15300 122 / 7e-34 VQ motif-containing protein (.1) AT5G53830 108 / 5e-28 VQ motif-containing protein (.1) AT1G80450 46 / 4e-06 VQ motif-containing protein (.1) AT5G08480 40 / 0.0006 VQ motif-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G044800 [exp] 281 / 4e-95 AT1G28280 223 / 1e-72 VQ motif-containing protein (.1.2) Potri.011G118200 [exp] 172 / 7e-53 AT1G28280 184 / 6e-58 VQ motif-containing protein (.1.2) Potri.001G399100 [exp] 170 / 4e-52 AT1G28280 190 / 2e-60 VQ motif-containing protein (.1.2) Potri.004G134200 [exp] 62 / 2e-11 AT5G08480 150 / 1e-46 VQ motif-containing protein (.1.2) Potri.006G266700 [exp] 47 / 3e-06 AT1G80450 79 / 1e-18 VQ motif-containing protein (.1) Potri.018G016500 [exp] 47 / 4e-06 AT1G80450 67 / 6e-14 VQ motif-containing protein (.1) Potri.006G266600 [exp] 47 / 4e-06 AT1G80450 61 / 6e-12 VQ motif-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015315 [exp] 171 / 2e-52 AT1G28280 203 / 3e-65 VQ motif-containing protein (.1.2) Lus10025443 [exp] 135 / 2e-39 AT1G28280 154 / 2e-47 VQ motif-containing protein (.1.2) Lus10041929 [exp] 105 / 5e-27 AT1G28280 155 / 7e-47 VQ motif-containing protein (.1.2) Lus10005543 [exp] 105 / 8e-27 AT5G53830 154 / 4e-46 VQ motif-containing protein (.1) Lus10042423 [exp] 68 / 2e-13 AT1G80450 83 / 6e-20 VQ motif-containing protein (.1) Lus10026247 [exp] 65 / 2e-12 AT1G80450 83 / 5e-20 VQ motif-containing protein (.1) Lus10020092 [exp] 49 / 6e-07 AT1G80450 86 / 5e-21 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [poplar] [flax] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Potri.011G053700.1 pacid=42781578 polypeptide=Potri.011G053700.1.p locus=Potri.011G053700 ID=Potri.011G053700.1.v4.1 annot-version=v4.1 ATGGAAACCTCACCAAGGCATCATCAAGATAACCAGAACCCACAATCTTTCCTTCCTTCACCAAATAGCCACAGCAGCAGCAGCAGCAACAGTAGCTCCA CCACGACGACGACAAATAATGTTGCACTCAACAACAATATTAACTACCCACCACCACTTCCGTCACCCAAACCCATTTCCAGATCCGAATCCACTAACCC ATACCCGACAACTTTTGTACAAGCTGACACTTCTTCCTTCAAACAAGTAGTCCAGATGTTGACTGGATCGCCCAAACCCGCCTCCACCACCACCTCCATC TCCACCACCCCAACCATCTCACAACCCGACCCTTCTCCTAGAAACCACAACATCCCTCCAATTAAATCCATACCAAAAAAGAACCAATCTTCCGGGTTCA AACTTTATGAACGTAGAAACTCAATCAAGAACCTCAAGATCAACCCTTTAAATCCGGTATTTGCCAGACCCAGTCCAGGCTTTTCTCCAAGAAAGCCAGA GATTCTGTCCCCAAGCATTCTCGATTTCCCTTCTCTTATTTTAAGCCCGGTGACTCCTTTAATACCCGACCCGTTTGACCGTTCCGGATCAGCGAAGTAT ACTAATTGTTTTAGTCCCATGAACAACAACAACAACAACAACAACAACAACAACAACAACTTCGTTAATGCTAATGTGATGGATACTGATGCAGAGGAGA AAGCAATAAAAGAGAGAGGATTTTACTTGCATCCATCACCCGGATCCACACCAAGAGAGACTGAGCCCCGATTGTTACCTCTATTTCCTGTTACTTCGCC AAGAGTTTCAGGTTCTGCTAGTCCGTCATCTTGA
AA sequence Show only first row Show all	>Potri.011G053700.1 pacid=42781578 polypeptide=Potri.011G053700.1.p locus=Potri.011G053700 ID=Potri.011G053700.1.v4.1 annot-version=v4.1 METSPRHHQDNQNPQSFLPSPNSHSSSSSNSSSTTTTTNNVALNNNINYPPPLPSPKPISRSESTNPYPTTFVQADTSSFKQVVQMLTGSPKPASTTTSI STTPTISQPDPSPRNHNIPPIKSIPKKNQSSGFKLYERRNSIKNLKINPLNPVFARPSPGFSPRKPEILSPSILDFPSLILSPVTPLIPDPFDRSGSAKY TNCFSPMNNNNNNNNNNNNNFVNANVMDTDAEEKAIKERGFYLHPSPGSTPRETEPRLLPLFPVTSPRVSGSASPSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28280			VQ motif-containing protein (....		Potri.011G053700 [exp]	0	1
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.017G013700 [exp]	4.12	0.6600	ERF46
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Potri.006G052900 [exp]	5.47	0.6076	CPK14.1
AT1G49780		PUB26	plant U-box 26 (.1)		Potri.009G100200 [exp]	14.07	0.6011
AT5G60800			Heavy metal transport/detoxifi...		Potri.004G214700 [exp]	17.74	0.6020
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G258200 [exp]	18.54	0.6019
AT1G80450			VQ motif-containing protein (....		Potri.006G266600 [exp]	19.97	0.6227
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.012G092500 [exp]	21.44	0.5959
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G258000 [exp]	22.53	0.6295
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Potri.002G123300 [exp]	31.44	0.5671
AT5G11000			Plant protein of unknown funct...		Potri.018G021800 [exp]	33.46	0.5747

Compare expression of checked genes

Potri.011G053700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.