Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28300 155 / 4e-43 B3 LEC2 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) AT3G24650 109 / 2e-25 B3 SIS10, ABI3 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) AT3G26790 95 / 2e-21 B3 FUS3 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) AT4G32010 74 / 1e-13 B3 HSL1, HSI2-L1, VAL2 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) AT2G30470 72 / 2e-13 B3 HSI2, VAL1 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) AT4G21550 58 / 8e-09 B3 HSI2-L2, VAL3 VP1/ABI3-like 3 (.1) AT1G01030 51 / 1e-06 B3 NGA3 NGATHA3, AP2/B3-like transcriptional factor family protein (.1) AT4G01500 49 / 3e-06 B3 NGA4 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) AT1G68840 47 / 2e-05 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT2G46870 46 / 2e-05 B3 NGA1 NGATHA1, AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G045800 [exp] 500 / 6e-177 AT1G28300 201 / 2e-60 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) Potri.002G252000 [exp] 106 / 2e-24 AT3G24650 499 / 2e-167 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Potri.017G061200 [exp] 100 / 1e-23 AT3G26790 288 / 8e-97 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.001G322700 [exp] 96 / 4e-22 AT3G26790 279 / 3e-93 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.019G130300 [exp] 76 / 3e-14 AT2G30470 757 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.006G108300 [exp] 73 / 1e-13 AT4G32010 743 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.016G136500 [exp] 73 / 2e-13 AT4G32010 789 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.013G157500 [exp] 71 / 6e-13 AT2G30470 767 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.004G035300 [exp] 71 / 9e-13 AT4G32010 483 / 3e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015428 [exp] 177 / 2e-52 AT1G28300 163 / 1e-47 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) Lus10022820 [exp] 107 / 1e-25 AT3G24650 313 / 1e-100 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Lus10011888 [exp] 105 / 6e-24 AT3G24650 312 / 6e-96 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Lus10041521 [exp] 100 / 3e-23 AT3G26790 255 / 1e-83 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10012572 [exp] 99 / 5e-23 AT3G26790 259 / 4e-85 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10014005 [exp] 89 / 9e-20 AT1G28300 79 / 1e-16 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) Lus10018440 [exp] 76 / 3e-14 AT4G32010 487 / 1e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10011245 [exp] 76 / 3e-14 AT2G30470 399 / 1e-122 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Lus10022741 [exp] 75 / 4e-14 AT4G32010 748 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10025226 [exp] 74 / 6e-14 AT4G32010 808 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.011G054000.1 pacid=42781056 polypeptide=Potri.011G054000.1.p locus=Potri.011G054000 ID=Potri.011G054000.1.v4.1 annot-version=v4.1 ATGGAGAACGTTTTTCCCACTTCATCAACCAACTCAGGCAACACCACCACTACCACAAATGCTAGCTCAGTAATGATGGGTTGTCCTCAGAATTCCCAGT TCTCCTCTATATATGGACCATTGAGCTACCCTTCAACACCTTCAAGCTCATTAACTCAGTCAAACTATTTTGCACCACAGTACTATACGACACCGCCTTG TGAAACTACGCAATTTCCATCCACAGATTCTCTAGACCAGCGTAGCCAGTATACACCAGCTGCAGATCCTTTCTATCCTGTCATGGTTGGCCAAAATGCA ATTGAAATGCAAAGATCGTGCATTTTGCAGCCTAATGCGTTGCAATTAGAGCAAGAAAGGAGAGCTCTAGATGCATACAAGACCAAGGTGGCAAGGTGCA TGAGAAAACTTGCACGCCAAAGAAGGCTTGGTAGAGCTTCTTCTGGAGCTAGTTCGACTCGAATAACGGATGCAAGTAGATTGGCTTTGCATGGTGCTGG TACTGATGGCCAAAACAGCAGGACCAACACTAGCAAAGATCTTTTCGAGTTCTTAACACCAGATAACAAGAAACTGAGAGCGTTGCTTAGGAAGGACTTG AAGAATAGTGATGTTGGGTCTCTTGGGAGAATTGTCCTTCCAAAGAGAGAGGTAGAGGAAAATCTTCCTCCTCTACATGATAAAGAAGGAATCCTACTTG TGCTCAGAGATATATACTCTAACCAAGAGTGGGGTTTAAAGTTAAAGTTCTGGACTAACAACAAAAGCAGGATGTATGTTCTTGAAAATACAGGAGAATT CGTTAAGCGACATGGGCTGGAGACTGGAGATTCCCTTACACTTTACGAGGATGAGAGCAAGAATCTCTATTTCTCTATCACAAAGGTGCAGAGACCAGAA TCAGCCCTAGCTCAAACACCACAACCTAAGAGCCACAACTGTAACCACCTGACAGAACATATGTGGCAAGATGGGGATGAAGAATATACATCTTTAGCAT TACTGACAGAACAACTTGAGAATAAAGAACAAGAAGAAGCTAACAGCCTTGGAGCTGTGCCTATGGACTTTTCTTGTTCATATACAAACGAACTAGAACT TAACAACAATCCTTTCAACAACATTAGTACCTATACCCAACCAGCATCTGCAGCTATGCAAACTTCTCCGCCAAATGGTAAAATGAAGGCGGTAGATGAT TCTCATGACGTAGATGACTGCTATACTGGTCTTGGTATGCTCCCTGATGTCCATAGCTACAATTTTTCGCTATGA
AA sequence Show only first row Show all	>Potri.011G054000.1 pacid=42781056 polypeptide=Potri.011G054000.1.p locus=Potri.011G054000 ID=Potri.011G054000.1.v4.1 annot-version=v4.1 MENVFPTSSTNSGNTTTTTNASSVMMGCPQNSQFSSIYGPLSYPSTPSSSLTQSNYFAPQYYTTPPCETTQFPSTDSLDQRSQYTPAADPFYPVMVGQNA IEMQRSCILQPNALQLEQERRALDAYKTKVARCMRKLARQRRLGRASSGASSTRITDASRLALHGAGTDGQNSRTNTSKDLFEFLTPDNKKLRALLRKDL KNSDVGSLGRIVLPKREVEENLPPLHDKEGILLVLRDIYSNQEWGLKLKFWTNNKSRMYVLENTGEFVKRHGLETGDSLTLYEDESKNLYFSITKVQRPE SALAQTPQPKSHNCNHLTEHMWQDGDEEYTSLALLTEQLENKEQEEANSLGAVPMDFSCSYTNELELNNNPFNNISTYTQPASAAMQTSPPNGKMKAVDD SHDVDDCYTGLGMLPDVHSYNFSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Potri.011G054000 [exp]	0	1
AT1G55790			Domain of unknown function (DU...		Potri.003G101200 [exp]	1.41	0.7849
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.010G191500 [exp]	14.07	0.7360
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Potri.011G098300 [exp]	25.21	0.7235	Pt-PHB.1
AT4G37210			Tetratricopeptide repeat (TPR)...		Potri.002G130800 [exp]	26.26	0.6812
AT5G49960			unknown protein		Potri.004G223400 [exp]	28.98	0.7296
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.005G147700 [exp]	29.12	0.7303
AT5G36930			Disease resistance protein (TI...		Potri.001G028750 [exp]	31.46	0.6633
AT5G41760			Nucleotide-sugar transporter f...		Potri.003G136800 [exp]	33.43	0.6419
AT2G26440			Plant invertase/pectin methyle...		Potri.006G134600 [exp]	46.46	0.6245
AT4G27640			ARM repeat superfamily protein...		Potri.008G085800 [exp]	46.63	0.7011

Compare expression of checked genes

Potri.011G054000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.