Plant FIBer expression Database

Pt-PM32.2 (Potri.011G054200) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-PM32.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21020 96 / 1e-23 Late embryogenesis abundant protein (LEA) family protein (.1)
AT5G44310 84 / 9e-19 Late embryogenesis abundant protein (LEA) family protein (.1), Late embryogenesis abundant protein (LEA) family protein (.2)
AT1G72100 44 / 5e-05 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G046000
[exp]
250 / 5e-84 AT4G21020 64 / 4e-12 Late embryogenesis abundant protein (LEA) family protein (.1)
Potri.001G398300
[exp]
43 / 6e-05 AT3G15280 51 / 2e-08 unknown protein
Potri.002G252100
[exp]
41 / 0.0001 AT4G13230 76 / 1e-18 Late embryogenesis abundant protein (LEA) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015427
[exp]
143 / 2e-41 AT4G21020 99 / 1e-24 Late embryogenesis abundant protein (LEA) family protein (.1)
Lus10014004
[exp]
126 / 6e-35 AT4G21020 99 / 2e-24 Late embryogenesis abundant protein (LEA) family protein (.1)
Lus10038156
[exp]
51 / 4e-08 AT4G13230 54 / 5e-10 Late embryogenesis abundant protein (LEA) family protein (.1)
Lus10042508
[exp]
49 / 2e-07 AT4G13230 52 / 2e-09 Late embryogenesis abundant protein (LEA) family protein (.1)
Lus10015426
[exp]
44 / 2e-05 ND 35 / 0.004
PFAM info
Representative CDS sequence
>Potri.011G054200.1 pacid=42780664 polypeptide=Potri.011G054200.1.p locus=Potri.011G054200 ID=Potri.011G054200.1.v4.1 annot-version=v4.1
ATGGCAGCCATTATCATTGCCAAAAACGCTATGCTCAATCTCTCAAAAGCCTTGATCCCTCAGCCCCCCTCTCTCTTCCCCAACTCCACGCCTAAAGTCT
CACGGGTCTGCTTCACTACCTATGCCTCCAAATATAACGAGGGACGGTATGCAGCGGAGGAGGATGAAGACCGAGCGTCAGGATTTTCTGAGAGAGCGAA
AGAAACTGCAAATGAAACAATTGACAGGACCAAAGAGCGTGCGGAGAAGGCGAAAGAACGTTCTAAGGAAATGAAAGAGAAGGTAAAGGGAAATGCAGAG
GAAATGAAGGAGAAGGCGAAAGGGTATGCACACGAGACAAAGGAGAGTGCCAAAGGCACGGCGCAGTCTGCCGCTGAGAAGGTTAAGGAAGGGACATACA
AGGCAGCGGAGACGGTAGAGAGAACGAAAGAAGGAGCGAAAGATTATGCATATGTTGCAAAAGAGAAGGCTAAAGACGGGACAGAGAGCGTGGCGGATAC
TGCACGTGATGTGAAAGAGAAGGCAAAAGACTATGCGGGAGCGGCAGGGGAGAAGGCAAAGGACGGGACTCATAAAATAGCTGAGACGGTGGAGAGTGTG
GGAGAGAAGGCGAAACAGACAGTGAAGGGAGCATTGGATGCTGCGAAGGAAACTACACAGAAGATTAAAGAGACTGTGGTGGGGAAAGATGATCATCACG
ATGATGATGATTATAGGAGGGAGAAGATCGATGAAGATGTTGTGAAGTACAAGAGGTGA
AA sequence
>Potri.011G054200.1 pacid=42780664 polypeptide=Potri.011G054200.1.p locus=Potri.011G054200 ID=Potri.011G054200.1.v4.1 annot-version=v4.1
MAAIIIAKNAMLNLSKALIPQPPSLFPNSTPKVSRVCFTTYASKYNEGRYAAEEDEDRASGFSERAKETANETIDRTKERAEKAKERSKEMKEKVKGNAE
EMKEKAKGYAHETKESAKGTAQSAAEKVKEGTYKAAETVERTKEGAKDYAYVAKEKAKDGTESVADTARDVKEKAKDYAGAAGEKAKDGTHKIAETVESV
GEKAKQTVKGALDAAKETTQKIKETVVGKDDHHDDDDYRREKIDEDVVKYKR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G21020 Late embryogenesis abundant pr... Potri.011G054200
[exp]
0 1 Pt-PM32.2
AT1G06225 CLE3 CLAVATA3/ESR-RELATED 3 (.1) Potri.004G053700
[exp]
2.64 0.8541
AT2G25060 AtENODL14 early nodulin-like protein 14 ... Potri.018G128800
[exp]
12.00 0.8354
AT1G79800 AtENODL7 early nodulin-like protein 7 (... Potri.001G187700
[exp]
15.87 0.8283
AT2G29420 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, ... Potri.012G052200
[exp]
21.44 0.8208
AT2G25060 AtENODL14 early nodulin-like protein 14 ... Potri.018G128900
[exp]
22.97 0.8104
AT4G03540 Uncharacterised protein family... Potri.004G043300
[exp]
29.52 0.8010
Potri.014G178900
[exp]
29.58 0.8040
AT4G35690 Arabidopsis protein of unknown... Potri.005G103600
[exp]
32.03 0.7932
AT3G22600 Bifunctional inhibitor/lipid-t... Potri.010G085300
[exp]
37.62 0.7835
AT5G38760 Late embryogenesis abundant pr... Potri.004G107900
[exp]
38.83 0.7805

Potri.011G054200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.