Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60850 119 / 3e-31 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT5G60200 113 / 2e-29 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT2G28510 112 / 9e-29 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1) AT2G37590 112 / 2e-28 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT1G21340 109 / 8e-28 DOF AtDof1,2 Dof-type zinc finger DNA-binding family protein (.1) AT3G52440 107 / 2e-27 DOF AtDof3,5 Dof-type zinc finger DNA-binding family protein (.1) AT5G62940 110 / 3e-27 DOF AtDof5.6, HCA2 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) AT5G65590 108 / 4e-27 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT2G28810 108 / 5e-27 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT1G28310 107 / 1e-26 DOF AtDof1. 4 Dof-type zinc finger DNA-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G046100 [exp] 493 / 3e-177 AT5G60850 120 / 2e-31 OBF binding protein 4 (.1) Potri.015G048300 [exp] 119 / 3e-31 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.012G063800 [exp] 117 / 3e-30 AT5G60850 137 / 9e-38 OBF binding protein 4 (.1) Potri.004G046600 [exp] 114 / 3e-29 AT1G28310 135 / 6e-37 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.011G055600 [exp] 114 / 5e-29 AT1G28310 140 / 1e-38 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.001G238400 [exp] 113 / 9e-29 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3) Potri.005G188900 [exp] 112 / 9e-29 AT1G21340 140 / 5e-40 Dof-type zinc finger DNA-binding family protein (.1) Potri.010G205400 [exp] 112 / 2e-28 AT2G37590 137 / 7e-38 DNA binding with one finger 2.4 (.1) Potri.002G070700 [exp] 110 / 6e-28 AT1G21340 151 / 3e-44 Dof-type zinc finger DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014002 [exp] 117 / 2e-31 AT5G60200 124 / 7e-35 TARGET OF MONOPTEROS 6 (.1) Lus10034652 [exp] 113 / 3e-29 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10017882 [exp] 113 / 3e-29 AT5G60850 167 / 3e-50 OBF binding protein 4 (.1) Lus10025707 [exp] 112 / 2e-28 AT5G65590 192 / 7e-59 Dof-type zinc finger DNA-binding family protein (.1) Lus10016566 [exp] 112 / 3e-28 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10040305 [exp] 113 / 4e-28 AT3G55370 147 / 1e-40 OBF-binding protein 3 (.1.2.3) Lus10017313 [exp] 109 / 2e-27 AT4G24060 171 / 8e-51 Dof-type zinc finger DNA-binding family protein (.1) Lus10029458 [exp] 109 / 3e-27 AT3G55370 161 / 6e-47 OBF-binding protein 3 (.1.2.3) Lus10014001 [exp] 107 / 5e-27 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1) Lus10003207 [exp] 108 / 6e-27 AT4G24060 159 / 9e-46 Dof-type zinc finger DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.011G054300.1 pacid=42781210 polypeptide=Potri.011G054300.1.p locus=Potri.011G054300 ID=Potri.011G054300.1.v4.1 annot-version=v4.1 ATGCAGGGAGGAAGTGAAGATGTGAAGCCAAATCAAGAGAGGAGATTGAAATCGACACAAGGAGATGATCAACAGCAACATCAGCCGCAGCAGCCTCAAA AATGCCCTCGCTGCGAGTCTCTGAATACCAAGTTTTGTTATTACAATAATTACAACCTTTCTCAGCCTCGGTACTTTTGCAAGACTTGTAGAAGGTATTG GACTCTTGGCGGTACCCTGAGGAATGTTCCTGTAGGAGGTGGTTGTCGCAAAGGAAAGCGAGCAAAAACATCATCATCTTCTAGTTCTGGCGAGAACTCG CGGTTGCAGCAACAGCTACCGCAACAACCACATCTTTTGCAGCATAATTTTGCAACCCCACAAAATATCCTAGCCACTAATAATTCAGGTAATCTTTCAA GTCCTGCGTTGAGGAACAAAGAATCAGGGAATTTGGTTTTACCTCCAGCTCCTGGGATGTCTACAATGGGATCTTATTTTCCTGGTGGTGGATTCTTCAC ATCTTTAGAAGCAATTCAGTCATTGAATAACAACCAGCCACCAATACAGTCTTTCCCTCTTCAGCCTCTAAATCAACCTGTCAATCTTGGTGGTGTTTTA GGAGAGACTTCAAATTTGGGTCTTTTGCATGGTTTCAACGCAGTTCCTGCTTTTGGGTCCCAAAATCAACAGCAAAGCCAATTCTACCATGTGGGTTATA GAGATACTAGGAGTATTGAACATTCTTTTTACCCACATAATCAAGAGAGCTTGATTCAATCAAGCAGGCCTGCCACCTCTTCTCATCAGCAGCAAAATTG GCATCATGGTTTTATGAGCAATAGTAGCCCCACTGTCTCTGATACTGCTTTGTGGAGTACAAGCACCAGCACCACCATAGGGCACACTAACAGTAACATC AATCCCACTGCTGGCTCCTCTCCCTTGAATCCAGATCAATGGAAACATGATTTGCCTGGATATGGACCACCATCATGA
AA sequence Show only first row Show all	>Potri.011G054300.1 pacid=42781210 polypeptide=Potri.011G054300.1.p locus=Potri.011G054300 ID=Potri.011G054300.1.v4.1 annot-version=v4.1 MQGGSEDVKPNQERRLKSTQGDDQQQHQPQQPQKCPRCESLNTKFCYYNNYNLSQPRYFCKTCRRYWTLGGTLRNVPVGGGCRKGKRAKTSSSSSSGENS RLQQQLPQQPHLLQHNFATPQNILATNNSGNLSSPALRNKESGNLVLPPAPGMSTMGSYFPGGGFFTSLEAIQSLNNNQPPIQSFPLQPLNQPVNLGGVL GETSNLGLLHGFNAVPAFGSQNQQQSQFYHVGYRDTRSIEHSFYPHNQESLIQSSRPATSSHQQQNWHHGFMSNSSPTVSDTALWSTSTSTTIGHTNSNI NPTAGSSPLNPDQWKHDLPGYGPPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.011G054300 [exp]	0	1
AT5G23160			unknown protein		Potri.013G149300 [exp]	3.16	0.9107
AT5G24800	bZIP	BZO2H2, ATBZIP9	BASIC LEUCINE ZIPPER O2 HOMOLO...		Potri.006G277800 [exp]	3.46	0.9162
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037700 [exp]	5.47	0.9145	HNL.2
					Potri.014G030500 [exp]	6.55	0.8871
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Potri.013G044500 [exp]	8.42	0.9231
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Potri.007G105000 [exp]	9.16	0.8708
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Potri.008G081600 [exp]	10.19	0.9208
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Potri.005G234500 [exp]	10.81	0.9076	Pt-COL6.1
AT3G20898			unknown protein		Potri.001G257700 [exp]	11.22	0.8769
AT5G51790	bHLH	bHLH120	basic helix-loop-helix (bHLH) ...		Potri.012G132000 [exp]	11.48	0.9196

Compare expression of checked genes

Potri.011G054300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.