Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45616 454 / 8e-145 AtRLP6 receptor like protein 6 (.1) AT3G05660 408 / 2e-128 AtRLP33 receptor like protein 33 (.1) AT1G47890 409 / 4e-127 AtRLP7 receptor like protein 7 (.1) AT1G71400 396 / 3e-124 AtRLP12 receptor like protein 12 (.1) AT3G11080 395 / 6e-123 AtRLP35 receptor like protein 35 (.1) AT5G27060 387 / 9e-120 AtRLP53 receptor like protein 53 (.1) AT3G11010 385 / 2e-119 AtRLP34 receptor like protein 34 (.1) AT3G25020 380 / 2e-117 AtRLP42 receptor like protein 42 (.1) AT3G05650 379 / 3e-117 AtRLP32 receptor like protein 32 (.1) AT3G25010 379 / 3e-117 AtRLP41 receptor like protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G010445 [exp] 1254 / 0 AT3G28890 360 / 4e-111 receptor like protein 43 (.1.2) Potri.012G027400 [exp] 1208 / 0 AT3G05660 347 / 3e-105 receptor like protein 33 (.1) Potri.012G028101 [exp] 1193 / 0 AT3G11080 400 / 1e-123 receptor like protein 35 (.1) Potri.012G026000 [exp] 1185 / 0 AT1G45616 383 / 3e-118 receptor like protein 6 (.1) Potri.012G014625 [exp] 1177 / 0 AT3G05660 366 / 4e-112 receptor like protein 33 (.1) Potri.012G009200 [exp] 1130 / 0 AT1G45616 386 / 7e-118 receptor like protein 6 (.1) Potri.012G008911 [exp] 1127 / 0 AT3G05650 303 / 5e-89 receptor like protein 32 (.1) Potri.012G008300 [exp] 1112 / 0 AT2G33060 332 / 5e-101 receptor like protein 27 (.1) Potri.012G030125 [exp] 1111 / 0 AT2G33060 330 / 2e-100 receptor like protein 27 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024721 [exp] 364 / 5e-112 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10003389 [exp] 358 / 6e-108 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10026415 [exp] 352 / 1e-105 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10014910 [exp] 347 / 2e-105 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10042239 [exp] 350 / 1e-104 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10006825 [exp] 342 / 3e-102 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10032335 [exp] 332 / 6e-100 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10011039 [exp] 332 / 5e-96 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10004310 [exp] 321 / 5e-96 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10011064 [exp] 314 / 3e-92 AT1G45616 366 / 2e-111 receptor like protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G055000.2 pacid=42781431 polypeptide=Potri.011G055000.2.p locus=Potri.011G055000 ID=Potri.011G055000.2.v4.1 annot-version=v4.1 ATGGGGTTTTCACCACTGTCCCTCTCCCAATCTCTCTCTTTCTTTCTGTTTCTCTTCCATTTCCATTCAACAATTTCTTCATCTCATTTCTGTGCTCCTG ACCAAAGTCTTTCTTTGCTCCAATTCAAAGAGTCCTTTTCCATTAATAGCTCTGCTTCAGATCGTTGCCAGCATCCCAAGACAGAGTCGTGGAAAGAGGG TACAGACTGCTGCTCGTGGGATGGGGTCACTTGTGACATGAAAACAGGGCATGTAACTGGACTAGACCTCCCTTGCAGCATGCTTTATGGCACCCTCCAT TCCAATAGCACCCTCTTCTCCCTGCATCATCTTCAAAAGCTCGACCTCTCTGACAATAATTTCAACTTCTCCCATATTTCTTCTCGATTTGGCCAGTTCT CCAATCTGACACTTCTTAACCTAAATTACTCAGTCTTTGCAGGTCAAGTTCCGTCGGAAATCTCTCATCTCTCCAAATTGGTTTCACTTGATCTCTCTCA GAATGACGATCTGAGTCTAGAACCAATTTCTTTTGACAAGCTTGTTCGAAACCTAACCAAGCTTAGAGAACTCAATTTGGCTTCTGTAAATATGTCTTTG GTTGCACCTAATTCCTTGACGAATCTGTCCTCTTCCTTTTCATCTCTTTCCCTCGGTGGTTGTGGATTGCAGGGGAAGTTCCCGGGTAACATCTTTCTCC TCCCAAACCTTCAATCACTGGATCTGTCATACAACGAAGGCCTCACTGGCTCTTTTCCTTCGTCCAATTTGAGTAATGTCCTCTCTCAGTTGGGTCTTTC TAATACAAGAATTTCAGTTTATTTAGAAAACGACTTAATCAGTAATCTAAAGTTATTAGAATATATGTCTCTTCGTAATAGTAACATTATAAGATCAGAT CTACCTCTACTGGGTAATCTCACACAGCTCATCAATTTAGACCTCTCAAATAACAATTTTAGTGGTCAGATCCCATCATTACTTGATAATCTCACACATC TCACATTTTTAGACCTCTCAAGTAACAATTTTAGCGGTCAGATCCCATCATCACTGGGTAATCTCACACATCTCACATTTTTAGACCTCTCAAGTAATAA TTTAAACGGTCAGATTCCATCATCACTTGGAAAACATGTACAGCTTCGTTACTTGTATCTCTCTTCCAATAAATTTATGGGTCAAGTTCCAGATTTAGGT AGACTAGTCAATCTTTCATATTTAGATTTATCCAATAATCAACTAGTAAGTCCTATCCATTCTCAATTAAATACCCTTTCAAATCTAGGGAGTCTAAGAT TATATGGTAACTTGTTCAATGGAACAATACCATCCTTTTTGTTTGCTCTTCCTTCTTTATATTATCTTGACCTTCATAACAATAATTTCATAGGCAATAT AAGTGAACTCCAAGACGATTCATTGGAATACCTTGATTTGAGCAATAACCACTTGCGTGGTCCAATCCCAAGTTCGATTTTCAAACAAGAGAACTTGACA ACCCTTATTCTTGCGTCCAATAGTAATTTGACAGGTGAGATTTCTTCTTCTATTTGCAAGCTGAGATTCCTTCGGGTCCTGGACTTGTCCACCAACAGCT TGAGTGGTTCTATGCCACAATGTTTGGGGAACTTCAGCAGCATGCTCTCCGTATTGCATCTAGGCATGAACAATCTTCAAGGCACCATCCCTTCAACATT TTCAAAGGATAATAGCTTGGAATATCTCAACCTCAATGGAAATGAAATAGAAGGGAAAATATCATCGTCTATCATCAACTGCACAATGTTGCAAGTTCTT GATCTTGGCAACAATAAGATTGAGGATACATTTCCTTACTTTCTAGAAACGCTTCCAAAGCTCCAAATTCTTGTCCTAAAATCCAATAAACTCCAAGGTT TTGGGAAGGGTCCGGCTGCATATAATTCCTTCTCTAAATTACGGATTCTTGACATCTCTGACAACAATTTTAGTGGGCCATTGCCAACTGGGTATTTCAA TAGTCTTGAAGCAATGATGGCCTCGGATCAAATCATGATTTACATGGGGACAACAAATTACACTGGCTATGTCTATTCCATAGAAATGACATGGAAAGGT GTAGAAATTGAGTTTACGAAGATCCGAAGTACTATCAGAGTACTTGATTTGTCAAATAACAATTTCACCGGAGAGATTCCAAAAATGATCGGAAAGCTTA AAGCACTCCAACAGCTCAACCTCTCTCATAATTCCCTTACAGGTCAAATCCAATCATCATTAGGAAATTTGACCAATTTGGAATCATTAGATCTATCTTC AAATTTGCTTACCGGAAGGATTCCAACGCAGCTGGGGGGTCTAACATTTCTTGCAATCCTAAACCTTTCACATAACCAGCTAGAGGGGCGTATACCAAGT GGAGAGCAGTTCAACACCTTTACTGCAACCTCATTTGAAGGAAACTTGGGTTTATGTGGATTTCAAGTACTAAAAGAATGCTACGGTGATGAGGCACCAT CATTACCGCCATCAAGCTTTGATGAAGGAGATGATTCAACACTGTTTGGAGGAGGATTTGGATGGAAAGCTGTGACAATGGGGTATGGATGCGGGTTTGT GTTTGGAGTTGCAACGGGATACATCGTGTTTAGAACAAGAAAACCTTCATGGTTTTTTAGGATGGTTGAAGATATATGGAATCTCAAGAGCAAGAAAACA AAGAAGAATGTTGGCAGATGTGGTGCTGGAAGAAACTAG
AA sequence Show only first row Show all	>Potri.011G055000.2 pacid=42781431 polypeptide=Potri.011G055000.2.p locus=Potri.011G055000 ID=Potri.011G055000.2.v4.1 annot-version=v4.1 MGFSPLSLSQSLSFFLFLFHFHSTISSSHFCAPDQSLSLLQFKESFSINSSASDRCQHPKTESWKEGTDCCSWDGVTCDMKTGHVTGLDLPCSMLYGTLH SNSTLFSLHHLQKLDLSDNNFNFSHISSRFGQFSNLTLLNLNYSVFAGQVPSEISHLSKLVSLDLSQNDDLSLEPISFDKLVRNLTKLRELNLASVNMSL VAPNSLTNLSSSFSSLSLGGCGLQGKFPGNIFLLPNLQSLDLSYNEGLTGSFPSSNLSNVLSQLGLSNTRISVYLENDLISNLKLLEYMSLRNSNIIRSD LPLLGNLTQLINLDLSNNNFSGQIPSLLDNLTHLTFLDLSSNNFSGQIPSSLGNLTHLTFLDLSSNNLNGQIPSSLGKHVQLRYLYLSSNKFMGQVPDLG RLVNLSYLDLSNNQLVSPIHSQLNTLSNLGSLRLYGNLFNGTIPSFLFALPSLYYLDLHNNNFIGNISELQDDSLEYLDLSNNHLRGPIPSSIFKQENLT TLILASNSNLTGEISSSICKLRFLRVLDLSTNSLSGSMPQCLGNFSSMLSVLHLGMNNLQGTIPSTFSKDNSLEYLNLNGNEIEGKISSSIINCTMLQVL DLGNNKIEDTFPYFLETLPKLQILVLKSNKLQGFGKGPAAYNSFSKLRILDISDNNFSGPLPTGYFNSLEAMMASDQIMIYMGTTNYTGYVYSIEMTWKG VEIEFTKIRSTIRVLDLSNNNFTGEIPKMIGKLKALQQLNLSHNSLTGQIQSSLGNLTNLESLDLSSNLLTGRIPTQLGGLTFLAILNLSHNQLEGRIPS GEQFNTFTATSFEGNLGLCGFQVLKECYGDEAPSLPPSSFDEGDDSTLFGGGFGWKAVTMGYGCGFVFGVATGYIVFRTRKPSWFFRMVEDIWNLKSKKT KKNVGRCGAGRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.011G055000 [exp]	0	1
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.018G148000 [exp]	1.00	0.9912
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G011600 [exp]	2.44	0.9894
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Potri.012G090500 [exp]	3.16	0.9854
AT1G30760			FAD-binding Berberine family p...		Potri.001G462700 [exp]	4.24	0.9848
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.013G040300 [exp]	5.65	0.9859
AT1G34420			leucine-rich repeat transmembr...		Potri.019G084800 [exp]	5.65	0.9735
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.016G003000 [exp]	6.70	0.9827
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Potri.019G059300 [exp]	7.00	0.9483
AT1G76360			Protein kinase superfamily pro...		Potri.002G009400 [exp]	7.54	0.9639
					Potri.002G247600 [exp]	8.48	0.9660

Compare expression of checked genes

Potri.011G055000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.