Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47620 174 / 2e-49 TCP AtTCP14, TCP14 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) AT1G69690 166 / 7e-48 TCP AtTCP15, TCP15 TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15, TCP family transcription factor (.1) AT1G58100 136 / 4e-36 TCP TCP8 TCP domain protein 8, TCP family transcription factor (.1.2) AT1G72010 135 / 7e-36 TCP TCP22 TCP family transcription factor (.1) AT1G35560 128 / 2e-33 TCP TCP23 TCP family transcription factor (.1) AT5G23280 123 / 1e-32 TCP TCP7 TCP family transcription factor (.1) AT5G08330 122 / 1e-32 TCP AtTCP11, CHE, TCP21 TCP domain protein 11, TCP family transcription factor (.1) AT3G27010 123 / 5e-32 TCP ATTCP20, PCF1, AT-TCP20 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) AT2G45680 123 / 1e-31 TCP TCP9 TCP family transcription factor (.1) AT5G51910 119 / 1e-30 TCP TCP19 TCP family transcription factor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G046300 [exp] 452 / 1e-158 AT3G47620 182 / 2e-52 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Potri.013G110700 [exp] 136 / 6e-36 AT1G35560 224 / 9e-70 TCP family transcription factor (.1) Potri.019G081800 [exp] 133 / 5e-35 AT1G72010 220 / 5e-68 TCP family transcription factor (.1) Potri.004G222100 [exp] 130 / 5e-33 AT1G58100 172 / 4e-48 TCP domain protein 8, TCP family transcription factor (.1.2) Potri.017G068748 [exp] 125 / 6e-33 AT3G27010 231 / 3e-74 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.001G327100 [exp] 125 / 1e-32 AT3G27010 230 / 6e-74 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.005G090300 [exp] 122 / 3e-32 AT5G23280 169 / 9e-52 TCP family transcription factor (.1) Potri.007G074028 [exp] 122 / 3e-32 AT5G23280 196 / 3e-62 TCP family transcription factor (.1) Potri.014G078500 [exp] 123 / 9e-32 AT2G45680 257 / 1e-83 TCP family transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037190 [exp] 163 / 6e-46 AT1G69690 172 / 9e-50 TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15, TCP family transcription factor (.1) Lus10008621 [exp] 142 / 3e-39 AT3G47620 140 / 4e-38 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10037046 [exp] 121 / 2e-33 AT3G27010 145 / 5e-44 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10015760 [exp] 123 / 1e-32 AT3G27010 181 / 1e-55 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10032022 [exp] 124 / 2e-32 AT3G27010 234 / 2e-75 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10010177 [exp] 122 / 1e-31 AT5G23280 186 / 1e-57 TCP family transcription factor (.1) Lus10013814 [exp] 104 / 7e-26 AT3G47620 119 / 2e-32 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10035193 [exp] 95 / 2e-22 AT3G27010 156 / 6e-47 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10042195 [exp] 89 / 1e-19 AT3G47620 84 / 9e-18 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10041328 [exp] 86 / 3e-19 AT3G47620 93 / 3e-22 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [poplar] [flax] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Potri.011G055500.2 pacid=42781061 polypeptide=Potri.011G055500.2.p locus=Potri.011G055500 ID=Potri.011G055500.2.v4.1 annot-version=v4.1 ATGGAAGGAGGTGATGATCAGTTCCACCATCAGCACCATCACCAGCATCACCACCGCCCAACCTTCCCATTCCAATTGCTGGAAAAGAAAGAAGACGAGC CTTGCTCTTCCTCTTCTCCTTACCCTTCTCTTCCCATCTCCACTACCGAACCTAACAGCAACAGCAACAGTACGAACACAAATCACTCTACCTCGAATCT CCAAATTGAGGTTGCTGAACCATCAAAGAAACCCCCTCCAAAACGAACATCAACAAAAGACAGACACACGAAGGTGGATGGACGTGGTCGTAGAATTCGC ATGCCAGCTCTCTGCGCTGCTAGGGTTTTTCAGCTCACTCGAGAGCTTGGCCACAAATCAGATGGTGAAACCATCGAGTGGTTACTTCAACAAGCTGAAC CAGCAGTGATCGCTGCCACAGGCACGGGCACAATCCCTGCTAATTTCACTTCACTCAACATATCCTTGCGTAGCTCTGGTTCAAGTATGTCAATTCCTTC TCACCTAAGATCAGGGAGTTTCAATCCAAACTTTTCACTGCAGCAACGTAGTCGGAGTTTGTTCCCCGGAATTGGGCTAGAAACCTCACAACCACCGACA TTCCTAAGTTTCCAATCTAGTAACAATCTGAATGCAGTGCTGCAAGCGAAGCAAGAATTGCGAGACAATTCTTCACTGGAATTATCAACGGAGACGGAAG AGAGTTTAAGCAGGAAACGAAGGTCCGAGCAAGATTTATCACCATCGCAACAGCATCAGATGGGGAATTACTTGTTACAATCCAGTGCAGGGGCAATCCC AGCTAGTCATGGTCAAATTCCAGCAAATTTTTGGATGCTGGCTAATTCCAATAACAATCAAGTCATGAGCGGAGACCCTATATGGACATTTCCTTCTGTC AACAACAGTAGTGTGTACAGAGGCAGCATGTCAAGTGGGTTGCATTTTATGAATTTTCCTGCTCCTGTTACCTTATTGCCTAGCCAGCAACTGGGGTCTA CTAGCATTGGTGGTGCCAGTGGTGGTAATAGTGGGATAAGTGAAGGGCATTTGAACATGCTAGCTGGATTGAATCCCTACCGACCTTCAGGTCTATCAGA ATCACAGGCGAGTGGGTCTCACTCACATCATGGTGGCGGTGGTGGAGGAAGCGATGATCGGCATGATACAACGAGTCATCACTCATAG
AA sequence Show only first row Show all	>Potri.011G055500.2 pacid=42781061 polypeptide=Potri.011G055500.2.p locus=Potri.011G055500 ID=Potri.011G055500.2.v4.1 annot-version=v4.1 MEGGDDQFHHQHHHQHHHRPTFPFQLLEKKEDEPCSSSSPYPSLPISTTEPNSNSNSTNTNHSTSNLQIEVAEPSKKPPPKRTSTKDRHTKVDGRGRRIR MPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSIPSHLRSGSFNPNFSLQQRSRSLFPGIGLETSQPPT FLSFQSSNNLNAVLQAKQELRDNSSLELSTETEESLSRKRRSEQDLSPSQQHQMGNYLLQSSAGAIPASHGQIPANFWMLANSNNNQVMSGDPIWTFPSV NNSSVYRGSMSSGLHFMNFPAPVTLLPSQQLGSTSIGGASGGNSGISEGHLNMLAGLNPYRPSGLSESQASGSHSHHGGGGGGSDDRHDTTSHHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Potri.011G055500 [exp]	0	1
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Potri.010G052400 [exp]	2.00	0.8694
AT5G60450	ARF	ARF4	auxin response factor 4 (.1)		Potri.009G011800 [exp]	4.89	0.8313
AT3G50150			Plant protein of unknown funct...		Potri.013G146400 [exp]	5.09	0.8583
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Potri.003G079700 [exp]	6.63	0.7994
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.008G171700 [exp]	7.34	0.8292
AT5G45540			Protein of unknown function (D...		Potri.015G116100 [exp]	8.06	0.8470
					Potri.010G190900 [exp]	11.66	0.8495
AT5G23300		PYRD	pyrimidine d (.1)		Potri.007G074201 [exp]	12.96	0.8005
					Potri.001G049700 [exp]	15.09	0.8410
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.002G014100 [exp]	15.23	0.7929

Compare expression of checked genes

Potri.011G055500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.