Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28310 140 / 1e-38 DOF AtDof1. 4 Dof-type zinc finger DNA-binding family protein (.1.2) AT5G60200 121 / 3e-32 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT2G37590 122 / 1e-31 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT5G02460 122 / 2e-31 DOF AtDof5. 1 Dof-type zinc finger DNA-binding family protein (.1) AT5G65590 120 / 2e-31 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT2G28810 119 / 1e-30 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT3G55370 118 / 2e-30 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT1G07640 117 / 2e-30 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT5G60850 116 / 8e-30 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT2G28510 115 / 1e-29 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G046600 [exp] 518 / 0 AT1G28310 135 / 6e-37 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.015G048300 [exp] 122 / 5e-32 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.005G149100 [exp] 122 / 7e-32 AT5G65590 197 / 1e-60 Dof-type zinc finger DNA-binding family protein (.1) Potri.010G205400 [exp] 121 / 2e-31 AT2G37590 137 / 7e-38 DNA binding with one finger 2.4 (.1) Potri.012G063800 [exp] 120 / 3e-31 AT5G60850 137 / 9e-38 OBF binding protein 4 (.1) Potri.005G134200 [exp] 120 / 3e-31 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.007G038100 [exp] 120 / 4e-31 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1) Potri.001G238400 [exp] 119 / 9e-31 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3) Potri.007G058200 [exp] 118 / 2e-30 AT5G65590 192 / 1e-58 Dof-type zinc finger DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015425 [exp] 130 / 3e-35 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10014001 [exp] 125 / 3e-33 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1) Lus10025707 [exp] 120 / 6e-31 AT5G65590 192 / 7e-59 Dof-type zinc finger DNA-binding family protein (.1) Lus10014002 [exp] 115 / 2e-30 AT5G60200 124 / 7e-35 TARGET OF MONOPTEROS 6 (.1) Lus10040305 [exp] 119 / 4e-30 AT3G55370 147 / 1e-40 OBF-binding protein 3 (.1.2.3) Lus10025340 [exp] 117 / 1e-29 AT2G37590 182 / 4e-54 DNA binding with one finger 2.4 (.1) Lus10016566 [exp] 117 / 1e-29 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10007976 [exp] 114 / 2e-29 AT5G60850 165 / 1e-49 OBF binding protein 4 (.1) Lus10034652 [exp] 114 / 3e-29 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10017882 [exp] 114 / 3e-29 AT5G60850 167 / 3e-50 OBF binding protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.011G055600.2 pacid=42781044 polypeptide=Potri.011G055600.2.p locus=Potri.011G055600 ID=Potri.011G055600.2.v4.1 annot-version=v4.1 ATGATTCCTTTGAGAGAAGAAATGCTAGGCAACTGTGAGAAGATGGTTGTCATCTCTTCAACTACTAACGCATGGCCACAGAATCAGATAGATGAGAAAA GCCTGATGGCATCAACAAGTAAACTAATGGAGAGACCAAGCCAAGAAGTACTTTCGCAACCACAGCAGCAGCAGCAGCTGCAGCAAGCTCTTAAATGTCC TCGTTGTGACTCCTCAAACACCAAGTTCTGTTACTATAACAACTACAGCTTATCTCAGCCAAGACACTTTTGCAAGGCTTGTAAGAGATACTGGACAAGA GGTGGCACTTTAAGGAATGTTCCTGTTGGTGGTGGATGTAGAAAGAACAAGCGTGTCAAGAGACCAGCCTCAGCCGCTGAAGGAGCTAGTAATTCAGTTT CTAGTGCAAACCCTAACCCTCAAACCCCAATTGACCATATTTCTTCAACTTCAAATCATATTAATCCTTTGTTTTATGGGTTATCTGGCAGTAACCCATC AGAGATGAACCTTCCATTTCCTGGTAGGTTCAATCCAAGGATGGATTCAGCTGTTTCTGGGTATCACGATCTCCAGCCTCAGTTAAATGCTCTTGCTTTA GGGTTTTCATCAGGAATCATGAGTACTAATGATGCTAATGGGTTTAACCCTACTAAGCAAATACAAGATGTGGTCACTTCAAATTCACTTCTTTCAAGTT ATTCCAATCTCTTTGGCTCCTCCACAACTTCCACCAACACAACTTCTCCTACTATAGCTTCTTTGCTTGCCTCTAGCTTTAACCAACAAAAGTTCACCAA TAGTGGTATCAAAGAGAGTACTAGAGCTCCTAACTACTTTCAAAGCTTGACAGTACCCTTCAAGGAGTTGCAAATGAATGGCAATAGTGAATCTGGGATT GGTATGAAAGGGGTGAAAACTGAGCATAATCAAAATAGGTTGGACTGGAATGTGCCATGCCAGAATCAGATAGAACAAGTTGGCTTGTCAGATCCTTCAA TGTATTGGAACACCAACACAAGTGTCGGTTCATGGCATGATCCAGCTAATATGGGGTCTTCAGTACTTCTTTGA
AA sequence Show only first row Show all	>Potri.011G055600.2 pacid=42781044 polypeptide=Potri.011G055600.2.p locus=Potri.011G055600 ID=Potri.011G055600.2.v4.1 annot-version=v4.1 MIPLREEMLGNCEKMVVISSTTNAWPQNQIDEKSLMASTSKLMERPSQEVLSQPQQQQQLQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTR GGTLRNVPVGGGCRKNKRVKRPASAAEGASNSVSSANPNPQTPIDHISSTSNHINPLFYGLSGSNPSEMNLPFPGRFNPRMDSAVSGYHDLQPQLNALAL GFSSGIMSTNDANGFNPTKQIQDVVTSNSLLSSYSNLFGSSTTSTNTTSPTIASLLASSFNQQKFTNSGIKESTRAPNYFQSLTVPFKELQMNGNSESGI GMKGVKTEHNQNRLDWNVPCQNQIEQVGLSDPSMYWNTNTSVGSWHDPANMGSSVLL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28310	DOF	AtDof1. 4	Dof-type zinc finger DNA-bindi...		Potri.011G055600 [exp]	0	1
AT2G45630			D-isomer specific 2-hydroxyaci...		Potri.014G073500 [exp]	9.48	0.8817
					Potri.011G072616 [exp]	13.22	0.8690
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Potri.005G048200 [exp]	17.20	0.8546
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Potri.003G056600 [exp]	18.11	0.8929
AT1G11050			Protein kinase superfamily pro...		Potri.017G133000 [exp]	21.33	0.8853
AT5G48300		APS1, ADG1	ADP-GLUCOSE PYROPHOSPHORYLASE ...		Potri.014G171800 [exp]	23.36	0.8792
AT5G62620			Galactosyltransferase family p...		Potri.012G072400 [exp]	25.29	0.8736
AT1G11050			Protein kinase superfamily pro...		Potri.017G132800 [exp]	25.76	0.8874
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G095900 [exp]	31.28	0.8814
AT5G65250			unknown protein		Potri.005G073500 [exp]	35.44	0.8820

Compare expression of checked genes

Potri.011G055600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.