Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33820 460 / 8e-165 ATMBAC1 Mitochondrial substrate carrier family protein (.1) AT5G46800 172 / 8e-52 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) AT1G79900 123 / 4e-33 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) AT5G66380 103 / 1e-25 ATFOLT1 folate transporter 1 (.1) AT5G01340 89 / 4e-20 AtmSFC1 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) AT4G11440 85 / 3e-18 Mitochondrial substrate carrier family protein (.1) AT1G34065 84 / 4e-18 SAMC2 S-adenosylmethionine carrier 2 (.1) AT1G14140 80 / 5e-17 Mitochondrial substrate carrier family protein (.1) AT5G58970 79 / 8e-17 ATUCP2 uncoupling protein 2 (.1.2) AT1G25380 79 / 1e-16 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G046801 [exp] 575 / 0 AT2G33820 453 / 4e-162 Mitochondrial substrate carrier family protein (.1) Potri.001G142600 [exp] 166 / 2e-49 AT5G46800 434 / 1e-154 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Potri.003G091500 [exp] 160 / 3e-47 AT5G46800 443 / 4e-158 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Potri.001G182000 [exp] 126 / 6e-34 AT1G79900 424 / 1e-150 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.003G053900 [exp] 120 / 6e-32 AT1G79900 419 / 2e-148 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.007G019000 [exp] 110 / 4e-28 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.012G066000 [exp] 84 / 3e-18 AT1G74240 446 / 6e-158 Mitochondrial substrate carrier family protein (.1) Potri.016G119500 [exp] 83 / 5e-18 AT5G01340 542 / 0.0 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) Potri.008G100100 [exp] 79 / 2e-16 AT5G15640 338 / 5e-116 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015420 [exp] 465 / 5e-167 AT2G33820 415 / 7e-147 Mitochondrial substrate carrier family protein (.1) Lus10013998 [exp] 268 / 3e-90 AT2G33820 215 / 3e-69 Mitochondrial substrate carrier family protein (.1) Lus10004565 [exp] 172 / 7e-52 AT5G46800 481 / 2e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Lus10000906 [exp] 170 / 5e-51 AT5G46800 482 / 1e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Lus10011451 [exp] 125 / 2e-33 AT1G79900 410 / 4e-145 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Lus10037544 [exp] 125 / 2e-33 AT1G79900 408 / 2e-144 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Lus10027817 [exp] 86 / 4e-19 AT5G01340 526 / 0.0 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 86 / 9e-19 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10029770 [exp] 84 / 4e-18 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Lus10042258 [exp] 83 / 6e-18 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.011G056000.1 pacid=42781761 polypeptide=Potri.011G056000.1.p locus=Potri.011G056000 ID=Potri.011G056000.1.v4.1 annot-version=v4.1 ATGGGAGAGACATTCGCTTACAAGGAATACTTAGCCGGTTTACTTGCTGGTGTTGCTACTGTTATCACTGGTCACCCTTTTGACACTGTCAAGGTGATGC TACAGAAACATAATACAGAAGCACATGGGATTAAGTACAAGAATGGTTTGCATTGCACGGCTAGGATACTACAGACTGAAGGAGTTAAAGGACTGTATAG AGGGGCAACATCATCTTTTGTTGGAGTGGCTTTTGAGAGTTCCCTTCTTTTTGGCATTTATTCCCAAACAAAGCAGTCATTGCAGGGAGGAGGTCAAAGT GATGTGCCCCGACCCCAAGTAATAATTCCATCAGCAGCATATGGCGGAGCTATTATTAGTTTTGTATTATGCCCATCAGAGCTAGTAAAATGTAGGATGC AAATTCAAGGCACTGACTCCTTGGTTCCAAAGTTCAGTAGATACAGTAGCCCACTTGATTGTGCCCTCCAAACAATGAAAAATGAAGGGGTTACAGGCAT TTTTCGTGGAGGTTTTACAACATTGTTGAGAGAATCTATTGGAAGTGCTGTCTTCTTTAGTGTTTATGAGTATGTCCGTTATTACATGCATTTACAATTG AAACCCACTTTATCTGACCACAGCAATTTAACTGACATGGGGATCGGAATTGTGACCGGTGGCCTTAGTGGCGTAGCTTTTTGGTCTGCTGTTTTGCCCT TGGATGTGGCGAAAACTATCATCCAGACAGCTCCAGATAAAAGCTCCACAAGAAATCCATTTGCAGTTCTGAATTCTATCTACAGCAGGGCTGGACTTAA AGGATGCTATACAGGTTTCGGTCCGACAATAGTGAGAGCATTTCCTGCTAATGCCGCTGCAATAGTCACCTGGGAGCTAGCCATGAAAATGCTAGGGGAT AAATCGTGA
AA sequence Show only first row Show all	>Potri.011G056000.1 pacid=42781761 polypeptide=Potri.011G056000.1.p locus=Potri.011G056000 ID=Potri.011G056000.1.v4.1 annot-version=v4.1 MGETFAYKEYLAGLLAGVATVITGHPFDTVKVMLQKHNTEAHGIKYKNGLHCTARILQTEGVKGLYRGATSSFVGVAFESSLLFGIYSQTKQSLQGGGQS DVPRPQVIIPSAAYGGAIISFVLCPSELVKCRMQIQGTDSLVPKFSRYSSPLDCALQTMKNEGVTGIFRGGFTTLLRESIGSAVFFSVYEYVRYYMHLQL KPTLSDHSNLTDMGIGIVTGGLSGVAFWSAVLPLDVAKTIIQTAPDKSSTRNPFAVLNSIYSRAGLKGCYTGFGPTIVRAFPANAAAIVTWELAMKMLGD KS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33820		ATMBAC1	Mitochondrial substrate carrie...		Potri.011G056000 [exp]	0	1
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Potri.011G143100 [exp]	7.74	0.6557	SR45.1
AT1G23280			MAK16 protein-related (.1)		Potri.012G085300 [exp]	19.59	0.6478
AT1G74240			Mitochondrial substrate carrie...		Potri.012G066000 [exp]	23.43	0.6436
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Potri.010G246500 [exp]	25.09	0.6323
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Potri.006G250800 [exp]	30.59	0.6206
AT3G05340			Tetratricopeptide repeat (TPR)...		Potri.013G021100 [exp]	34.05	0.6434
AT1G24310			unknown protein		Potri.010G059100 [exp]	50.19	0.5577
AT5G07900			Mitochondrial transcription te...		Potri.003G190400 [exp]	59.46	0.6103
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Potri.003G186900 [exp]	61.70	0.6032
					Potri.019G076200 [exp]	64.57	0.5871

Compare expression of checked genes

Potri.011G056000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.