Plant FIBer expression Database

Potri.011G056100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G28320 714 / 0 DEG15 protease-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G046900
[exp]
1243 / 0 AT1G28320 737 / 0.0 protease-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015419
[exp]
603 / 0 AT1G28320 485 / 2e-163 protease-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0124 Peptidase_PA PF13365 Trypsin_2 Trypsin-like peptidase domain
Representative CDS sequence
>Potri.011G056100.1 pacid=42780793 polypeptide=Potri.011G056100.1.p locus=Potri.011G056100 ID=Potri.011G056100.1.v4.1 annot-version=v4.1
ATGGGTTTGCCTGAAATCGTAGATGTTGCCCGTAACTTCGCTGTCTTGGTCAGAATCCAAGGCCCCGACCCCAAAGGACTAAAGATGCGAAAACATGCTT
TTCATCAATTTAATTCTGGCAATACAACACTTTCAGCTTCTGGGCTGTTATTACCTGACACCCTTTATGATGCTGAATTGGCTAACCGGATTTTGGAGGC
TAAAAGCCAGGGTCTTGGGATGGTAGTCACAGTTGCTTCTGTTGTTGAGCCTTTTTTGTCATCAAAACACAGAGAGGGCATTTCTCAGGGCCCACCCGAG
TTGATTCCTGGTGCTCATGTTGATGTTATGGTAGAGGGAAAGTTGGGTTTGAGGAAAGATGAAGATGGGGTTTTGGATAAAGGCGCCCCTTGCTGGCTAA
GTGCACAACTTATTAGATTGGTTGATGTTCCTGTATCTTCCCTTGCTCTTCAATCACTTGTTGAAGCTTCTTCAGGCTCGATGGACCATGGATGGGAGGT
TGGTTGGTCTCTGGCCTCACATGAGAGCGGTCCTCAGCCTTTTATGGATGTTGGCCAGACACAGACTGAGCATGGAAATGCTTCTACTGTGGAGAGCCAT
AGACATGCAAGGGGAGGATCTAGCAATCCAAGTATTATGGGCAGATTGACCACAAGGGTTGCTATTCTTGGTGTTTTCTTACATTTGAAGGATCTGCCCA
ACTTTAAAATATTGGCATCAAGAAAAAGGGGGGATTTTCTTTTAGCGGTGGGTTCTCCTTTCGGCATCCTCTCACCTGTCCACTTCTTTAACAGCTTGTC
AGTGGGATCCATTGCCAACTGCTATCCTCCCAGATCATCTGACATATCATTACTGATGGCTGACTTTCGGTGTCTTCCAGGAATGGAAGGTAGTCCAGTT
TTTGGTGAAAATTCAGATTTCATTGGTATATTGATTAGACCATTGAGGCAAAAGAGTACCGGCGCTGAAATCCAGCTGGTGATTCCGTGGGAAGCCATTG
CAACTGCTTGCAGTGACTTGCTGCTGAAGGAGCCTCAAAATGCTGAAAAAGGGATTCATTTTAATAAGGAAAACTTAAATGCTGTAGGGAATGCATACAG
CCCTAAGTCAGATGGATCCTTCCCTTACAAATATGAGCATCATAATTCTCATCGCCCTTCCCCACTGCCAGTTGAGAAGGCTATGGCTTCTATTTGTCTT
ATTACCATTGATGAAGCTGTATGGGCATCTGGGGTTCTGCTTAACGATCAAGGTCTGATACTCACAAATGCTCACCTGTTAGAACCTTGGAGATTTGGGA
AAACAACTGTAAATGGTAGAGAAGATGGAACCAAATCAGAGGATCTTTTTTTTCCACCCAAGGAATTTTCTAGATATAGTGAAGTTGATGGCTACAGGAA
GAGTCAGAGGTTGCCACCAAAGACAATGAACATTGTGGATTCTTTGGTGGCTGATGAGAGGAAGGGATACAAATTGAGTTTGTCTTACAAAGGCAGTAGA
AATATACGTGTTCGTTTGGACCATGCTGACCCTTGGATTTGGTGCGATGCTAAAGTAGTGTATGTTTGTAAGGGACCATTGGATGTTGCCCTTCTGCAGC
TTGAGCATGTTCCAGATCAGCTTTGCCCTACCAAAGTGGATTTCAAATCTCCATCTCTGGGATCGAAGGCGTATATCATTGGACATGGACTTTTTGGACC
CCGATGTGGCTCTTCCCCCTCTGTTTGCTCCGGAGTGGTATCAAAAGTAGTCAAAACAAAGGCACCCCCATATTGTCAATCCCTTCAAGGAAGGAATTCA
CACATTCCAGCAATGCTTGAAACAACAGCTGCTGTCCACCCAGGTGGTAGTGGTGGTGCTGTCATTAATTCAGAAGGTCATATGATTGGACTTGTTACCA
GCAATGCAAGGCATGGTGGAGGAACAGTTATACCACATCTGAACTTCAGCATTCCATGTGCAGTTTTGGCGCCTATCTTTGATTTTGCAAAAGAAATGCG
GGATATAGCACTTCTGCAAAATCTTGACCAACCAAATGAAGACCTTTCTTCTGTATGGGCATTAATGCCACCTCTCCCCCCCAAACCAACCCCTCCTTTG
TCTACTCTGCCAGAGTCAATACTGCAAGATAATGAGAAACAAGTGAAGGGTTCTAGATTTGCCAAATTCATTGCTGAAAGAGACAAGCTTTTTAGAGGGT
CAACTCAACTAGGCAAGGCCGGGAGCATTTCAAACGTGATTTTCCCCAGTAAGTTATGA
AA sequence
>Potri.011G056100.1 pacid=42780793 polypeptide=Potri.011G056100.1.p locus=Potri.011G056100 ID=Potri.011G056100.1.v4.1 annot-version=v4.1
MGLPEIVDVARNFAVLVRIQGPDPKGLKMRKHAFHQFNSGNTTLSASGLLLPDTLYDAELANRILEAKSQGLGMVVTVASVVEPFLSSKHREGISQGPPE
LIPGAHVDVMVEGKLGLRKDEDGVLDKGAPCWLSAQLIRLVDVPVSSLALQSLVEASSGSMDHGWEVGWSLASHESGPQPFMDVGQTQTEHGNASTVESH
RHARGGSSNPSIMGRLTTRVAILGVFLHLKDLPNFKILASRKRGDFLLAVGSPFGILSPVHFFNSLSVGSIANCYPPRSSDISLLMADFRCLPGMEGSPV
FGENSDFIGILIRPLRQKSTGAEIQLVIPWEAIATACSDLLLKEPQNAEKGIHFNKENLNAVGNAYSPKSDGSFPYKYEHHNSHRPSPLPVEKAMASICL
ITIDEAVWASGVLLNDQGLILTNAHLLEPWRFGKTTVNGREDGTKSEDLFFPPKEFSRYSEVDGYRKSQRLPPKTMNIVDSLVADERKGYKLSLSYKGSR
NIRVRLDHADPWIWCDAKVVYVCKGPLDVALLQLEHVPDQLCPTKVDFKSPSLGSKAYIIGHGLFGPRCGSSPSVCSGVVSKVVKTKAPPYCQSLQGRNS
HIPAMLETTAAVHPGGSGGAVINSEGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLAPIFDFAKEMRDIALLQNLDQPNEDLSSVWALMPPLPPKPTPPL
STLPESILQDNEKQVKGSRFAKFIAERDKLFRGSTQLGKAGSISNVIFPSKL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G28320 DEG15 protease-related (.1) Potri.011G056100
[exp]
0 1
AT5G62620 Galactosyltransferase family p... Potri.012G072400
[exp]
1.41 0.9193
AT1G09700 DRB1, HYL1 HYPONASTIC LEAVES 1, DSRNA-BIN... Potri.017G126700
[exp]
2.44 0.9152
AT4G31040 CemA-like proton extrusion pro... Potri.018G150000
[exp]
5.00 0.9005
AT5G65685 UDP-Glycosyltransferase superf... Potri.007G009600
[exp]
7.48 0.8905
AT4G03510 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) Potri.019G100800
[exp]
9.16 0.9170 Pt-RMA1.1
AT4G14570 AtAARE, AARE acylamino acid-releasing enzym... Potri.008G160400
[exp]
10.48 0.8950
AT1G21650 SECA2 Preprotein translocase SecA fa... Potri.002G078000
[exp]
10.95 0.8835
AT5G51910 TCP TCP19 TCP family transcription facto... Potri.012G135900
[exp]
14.28 0.8936
AT5G06130 chaperone protein dnaJ-related... Potri.006G210500
[exp]
16.12 0.8796
AT2G28350 ARF ARF10 auxin response factor 10 (.1) Potri.004G211700
[exp]
18.97 0.8651 ARF10.2

Potri.011G056100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.