Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44280 323 / 8e-106 ATRING1A ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) AT1G03770 286 / 3e-92 ATRING1B ARABIDOPSIS THALIANA RING 1B, RING 1B (.1.2.3) AT1G28327 87 / 6e-19 unknown protein AT4G21070 52 / 5e-07 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT1G06770 50 / 1e-06 DRIP1 DREB2A-interacting protein 1 (.1.2) AT2G30580 50 / 2e-06 BMI1A, DRIP2 DREB2A-interacting protein 2 (.1) AT3G23060 49 / 6e-06 RING/U-box superfamily protein (.1) AT2G34000 43 / 7e-05 RING/U-box superfamily protein (.1) AT2G25410 44 / 0.0001 RING/U-box superfamily protein (.1) AT2G25409 43 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047000 [exp] 707 / 0 AT5G44280 328 / 3e-107 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.017G013000 [exp] 375 / 3e-126 AT5G44280 355 / 3e-117 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.007G138700 [exp] 367 / 6e-123 AT5G44280 312 / 3e-100 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.001G358100 [exp] 55 / 1e-07 AT4G21070 649 / 0.0 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Potri.010G077800 [exp] 54 / 1e-07 AT2G30580 352 / 4e-118 DREB2A-interacting protein 2 (.1) Potri.005G219000 [exp] 53 / 2e-07 AT2G30580 399 / 5e-137 DREB2A-interacting protein 2 (.1) Potri.008G161500 [exp] 52 / 4e-07 AT2G30580 317 / 4e-105 DREB2A-interacting protein 2 (.1) Potri.013G042000 [exp] 50 / 2e-06 AT2G30580 362 / 5e-122 DREB2A-interacting protein 2 (.1) Potri.005G054400 [exp] 50 / 3e-06 AT2G30580 310 / 5e-102 DREB2A-interacting protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018609 [exp] 313 / 4e-101 AT5G44280 375 / 3e-124 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10039845 [exp] 305 / 7e-98 AT5G44280 370 / 2e-122 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10036151 [exp] 51 / 2e-06 AT4G21070 381 / 6e-118 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Lus10022569 [exp] 47 / 7e-06 AT3G07200 81 / 3e-19 RING/U-box superfamily protein (.1.2) Lus10014749 [exp] 48 / 9e-06 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1) Lus10033860 [exp] 48 / 2e-05 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1) Lus10032119 [exp] 47 / 2e-05 AT3G27330 251 / 1e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10006558 [exp] 47 / 3e-05 AT2G30580 252 / 2e-80 DREB2A-interacting protein 2 (.1) Lus10021993 [exp] 46 / 4e-05 AT2G30580 276 / 5e-89 DREB2A-interacting protein 2 (.1) Lus10042532 [exp] 45 / 7e-05 AT1G06770 267 / 9e-86 DREB2A-interacting protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.011G056300.1 pacid=42780347 polypeptide=Potri.011G056300.1.p locus=Potri.011G056300 ID=Potri.011G056300.1.v4.1 annot-version=v4.1 ATGCCAGCCCAGAAACGTTCCTACGAGACCCTCCAGAAGGAAGATGATGCTCTTCTTCGGCAGCAGCAAGACCACACTAACAACAACCATGAACAAAAGC AAGAGCCTCGAAGCGATATTGATGATGACGGTGGTGTTGGTGAGCAATCCGATCGAAGCCAGCCTTCTTCAAATATTAACGAAGACGTGAAAGAAGAATA TGTTGTAGTGAAGTTGTCGGAGATACGGAAGGAAGTGCAATGCCCAATCTGTCTAGGGATTATTCGTAAAACAAGAACAGTGATGGAATGTCTGCATCGT TTTTGCAGGGAATGCATTGACAAATCTATGCGGCTCGGAAACAACGAGTGCCCAGCTTGCCGCACACATTGTGCCAGTCGTAGGTCTTTGAGAGACGACC CAAATTATGATGCACTAATTGCAGCTTTGTATCCAGATATTGACAAATATGAAGAAGAGGAATTGGCTTTCCAAGAAGATGAGAAGGCACGTAATAAGGA GATCCAGGCTACCATTGCCCAGACTTTTGATCGACAGGCTGAAGCTCTGAGTAGAAAACGGTCAACAGCTAAAGCGACAGCAGCAGTATTTGCAAGGAGA ACACCAAGTCGATTTCGAGATGCCCACTCAAGGGGAAGAAGAAATTATCGAATAGCTGAACTTCAAGGATCTGATGACAATGAAGATGCAAATGGTGGTG GAGGCAAAGATTCATCATCTACTGATGAGCACAGTGCAGAAGTCAAACCAAAAAGATACAGGAGGTGTTCAGCTGCTTTTAATGCAGATGGAAGTGGTGG TGAAAATGATTCAGAAGTGAATAAAGAATCTGTGGGGGCATCTGCTGGGCTCATTAGCTCCTCAGAAAGGCTTGCCTGGGGCAAAAATGGCATGCGGAGT CACACCCGGTATGGCAGTGCAAATGGCAGCAATGTAAAAAATGCTCGAAACAGTCGCATCTCTAAGTTAGCTGATTATCTACGTAACTTGGATGAAAATG ATAATGAGTTGGATATCAACCTCATGCTTGTTTCTTTTGATGAACAAAGAGTACCCAGTTTGCAGCGCCCATACCTTTGCTGCAGGCCAACTTTGTCGAT TAAGAGCCTGTGCCAGTATGTTGCTTTCCAAACCTCTTTGCAAGCCAATGAAGTGGAAATATATTTGGTCCAAGATATGAATTCCAAGCTCGACTTTTCA CTCTCCATGAGTTCTCCAGTTTCTAGACATGGTATAATCGATCCATGCAAAGATAAATTGCAAGTTTTAGAACAACACGAAACTTTGGGAGGACTTAAAA CAAACAATTGCATTCATGGGCACCTGCTTCTGGCTTATCAGAAAAAGCCGTGA
AA sequence Show only first row Show all	>Potri.011G056300.1 pacid=42780347 polypeptide=Potri.011G056300.1.p locus=Potri.011G056300 ID=Potri.011G056300.1.v4.1 annot-version=v4.1 MPAQKRSYETLQKEDDALLRQQQDHTNNNHEQKQEPRSDIDDDGGVGEQSDRSQPSSNINEDVKEEYVVVKLSEIRKEVQCPICLGIIRKTRTVMECLHR FCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEELAFQEDEKARNKEIQATIAQTFDRQAEALSRKRSTAKATAAVFARR TPSRFRDAHSRGRRNYRIAELQGSDDNEDANGGGGKDSSSTDEHSAEVKPKRYRRCSAAFNADGSGGENDSEVNKESVGASAGLISSSERLAWGKNGMRS HTRYGSANGSNVKNARNSRISKLADYLRNLDENDNELDINLMLVSFDEQRVPSLQRPYLCCRPTLSIKSLCQYVAFQTSLQANEVEIYLVQDMNSKLDFS LSMSSPVSRHGIIDPCKDKLQVLEQHETLGGLKTNNCIHGHLLLAYQKKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.011G056300 [exp]	0	1
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Potri.002G243300 [exp]	6.48	0.6774
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Potri.008G216501 [exp]	10.19	0.6563
AT4G36720		HVA22K	HVA22-like protein K (.1)		Potri.007G029300 [exp]	11.48	0.5958
AT3G06140			RING/U-box superfamily protein...		Potri.010G030600 [exp]	29.39	0.5916
AT2G45320			unknown protein		Potri.014G068500 [exp]	35.09	0.6568
AT5G54430		ATPHOS32	Adenine nucleotide alpha hydro...		Potri.001G409100 [exp]	48.43	0.5920
AT5G48630			Cyclin family protein (.1.2)		Potri.002G246800 [exp]	52.34	0.6533
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Potri.006G091800 [exp]	57.68	0.6387
AT4G33690			unknown protein		Potri.001G287900 [exp]	62.68	0.6270
AT1G04900			Protein of unknown function (D...		Potri.001G314700 [exp]	72.80	0.6038

Compare expression of checked genes

Potri.011G056300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.