Plant FIBer expression Database

Potri.011G056600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G33835 151 / 2e-38 C3HZnF FES1 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
AT3G18640 97 / 2e-20 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
AT3G26850 91 / 3e-20 histone-lysine N-methyltransferases (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G061100
[exp]
107 / 1e-23 AT3G18640 140 / 2e-34 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Potri.007G107800
[exp]
106 / 2e-23 AT3G18640 142 / 8e-35 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Potri.018G051900
[exp]
103 / 2e-22 AT3G26850 168 / 4e-47 histone-lysine N-methyltransferases (.1.2)
Potri.006G227200
[exp]
92 / 7e-19 AT3G26850 158 / 2e-43 histone-lysine N-methyltransferases (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025447
[exp]
307 / 1e-92 AT2G33835 140 / 1e-34 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Lus10015319
[exp]
254 / 5e-74 AT2G33835 128 / 7e-31 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Lus10002082
[exp]
107 / 1e-23 AT3G26850 214 / 1e-59 histone-lysine N-methyltransferases (.1.2)
Lus10020889
[exp]
98 / 9e-21 AT3G18640 167 / 6e-43 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Lus10003846
[exp]
97 / 2e-20 AT3G18640 192 / 4e-52 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Lus10033487
[exp]
89 / 6e-18 AT3G18640 176 / 6e-46 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0537 CCCH_zf PF16131 Torus Torus domain
Representative CDS sequence
>Potri.011G056600.1 pacid=42781671 polypeptide=Potri.011G056600.1.p locus=Potri.011G056600 ID=Potri.011G056600.1.v4.1 annot-version=v4.1
ATGCCACCATCAGCCGCCGCCACCGGCGACGACGACGAAGACCACGCCCTTCCCTCTCCCAATCCATCGTTCGCTCAAATCTCGGGTTCCGACATGGATA
TCGATAACGGTGATGACGAAGAAGAGGAGGATCCGGAAGAAGAAGTAGGCGGCGGCGACGACGACGACGACGACGAAAAGATAGAAGAAATAGAAGAAAA
AGAAGAAGTTGAAGAGGAGGAAGTTGATCAGAGACGTAACGATAATAGACAGCATCTGGAGTCTGACAGGCAAATGGGATCACATTCTACACATGAGATG
TCTGAACTGAGGGAAGATAGTGTCAGTAATTTCAAATGTTCTGGCCCTTTGGATGGACCATTGACATTGCAGAAGGAGAAGTCATGTGTGAATTATTTAG
ATTCATGGTCCCCCAAATTGAGTAAACATTTGGTTATTGCTCAAAAAAATGGAACTTTGGAACATGCAATTAATAAAACAGATGCCTTCCGCAATAGCAA
GACTCATTTAAGTAATAGTAGCGAAGCTATAGCTGTTGAGACCACTGAGCCATTTGTTATCACAGGCATAGAGGTGGATGTTGTCTTATCTAAGAGAAAC
TGCTTGGGTCAGGAGGCTAATGTCGTTCTGGATTCTAAGGAAGAACTTAAACCAGTGGACGTGAAGTCAGAGGATAGCAAAGAGCAAACAGAATCGAGGT
TTTCCAGATTGGTGGCTTCTGGGACAAGGGCAAGAAGTTTATCCCCTTCTACTGAGCTTAGGGATGGAAACAAACGCGCAGCAGTAATTTGTGACTTTTT
TGCCAAAGGGTGGTGCATTAGAGGGAGTTCATGTAGGTTCCTTCATACAACCAACAAAGCAGATAACACAGGCCAACAGTTAGGGGTAGATGAGGTCGCA
ACCCGAGAAGACCAGTTTGATGAAGGTGTGAGAAACATTTTGGAGACACCAAAGTTTCCTCATTTTCCTGACCCAGTTGCTGCTTCAACAGGAAAAGAAG
CTACATTTTCTTCTCATTTCTCTTCAGAAAGACTCCCACCACTAGAACACAAAGAAAACGAAAGGTTGCATCAGTTGGATGATAAGCACAAGTTGTCACT
TCGACAAAGAGTGGGCATTCCTCTCAATGCCAAGCAATTTTCTTCCTCCAAAGACGATCCTGGCTTTTCTTCCTCATTTAAGGATGTAGGAATAGAGAAT
TTTAGACAACAATGGCCTGCGACTGATTATGGTAGTTACACTTCTCTAATTAACAGAGGATCATCATTTTCTTTTAGTTCCTCTTTTGATACAAGCCTGC
TTGGTTCTCAAAAGCTGCTGGATAGTGATCGTGCTTCTAGATCATCTTCATTACTGCAAAGTGCTTCTGCTTTCTCTGGTTCTGAGCCAGAAAGTTTGTC
TCTAGCTAGTGTACCTGGGGATCAATTGCGTCATGCAGAGCATAAAACAAAAATTTCTTCAAATGACTGGGAGCCATCTGTACCTTTTCGCCCTTCCTTT
TTCATTACTCCTGAAATGATATCATCTGCTGGGAGCAAGTATGATCCTCTTCGAGATAGCTTTGTCTTGCCCAATGTAGGAGACAAATCCTTCAAATTCT
CTTTCTTTAGTCTAGGAGCATCCATCTCAAATACATCGCAGCAACCAATATATGGTGATTCCTTATCAAATCGAAACTTTGGCACTGAATTTAATGGTGA
CAAAAGTACCATATCTTCTCATGATAAACCCCACGGAAGTCTGTCGGATAAAAATTGCAGTACACCTGGAAAAGATTCATTTACCACTGCAACAGTGACA
GGAGGAGCTGGTACAGCTGATGGTGAAAATGGGAGTGCACTCAAGGAAGAAAGTGCCTCAGGTATTGGTTATGACAAAGTTAATCGAGTTACGAACAAAA
TTGATCGTGATGCTAGACCCCAAACAGATGGGTCAAGACACAAAAAGGACTTAAAGGCAGATAGTGTTAGACAAAACAATGACATGGAGGTTGATCAAAA
GATAGGTGGGGATACGCAAAAAGAATCGAAAGTGCTGAGACATTTTCGTTCTGCTCTTATTGATTTTGTTAAAGATTTGTTGAAACCAACTTGGCGTGAG
GGTCATCTCAGCAAGGATGCACATAACACAATAGTTAAAAAGACAGTTGAGAAGGTTCTTAGCACCTTGCAACCTCATCAAATTCCAGCTACTGTTGAGT
CAATTAAGCAATATCTTTCTTCATCTCAGCCAAAAATGGCAAAGCTTGTTGAGGGATACATTTCTAAGTATGGAAAATCTTGA
AA sequence
>Potri.011G056600.1 pacid=42781671 polypeptide=Potri.011G056600.1.p locus=Potri.011G056600 ID=Potri.011G056600.1.v4.1 annot-version=v4.1
MPPSAAATGDDDEDHALPSPNPSFAQISGSDMDIDNGDDEEEEDPEEEVGGGDDDDDDEKIEEIEEKEEVEEEEVDQRRNDNRQHLESDRQMGSHSTHEM
SELREDSVSNFKCSGPLDGPLTLQKEKSCVNYLDSWSPKLSKHLVIAQKNGTLEHAINKTDAFRNSKTHLSNSSEAIAVETTEPFVITGIEVDVVLSKRN
CLGQEANVVLDSKEELKPVDVKSEDSKEQTESRFSRLVASGTRARSLSPSTELRDGNKRAAVICDFFAKGWCIRGSSCRFLHTTNKADNTGQQLGVDEVA
TREDQFDEGVRNILETPKFPHFPDPVAASTGKEATFSSHFSSERLPPLEHKENERLHQLDDKHKLSLRQRVGIPLNAKQFSSSKDDPGFSSSFKDVGIEN
FRQQWPATDYGSYTSLINRGSSFSFSSSFDTSLLGSQKLLDSDRASRSSSLLQSASAFSGSEPESLSLASVPGDQLRHAEHKTKISSNDWEPSVPFRPSF
FITPEMISSAGSKYDPLRDSFVLPNVGDKSFKFSFFSLGASISNTSQQPIYGDSLSNRNFGTEFNGDKSTISSHDKPHGSLSDKNCSTPGKDSFTTATVT
GGAGTADGENGSALKEESASGIGYDKVNRVTNKIDRDARPQTDGSRHKKDLKADSVRQNNDMEVDQKIGGDTQKESKVLRHFRSALIDFVKDLLKPTWRE
GHLSKDAHNTIVKKTVEKVLSTLQPHQIPATVESIKQYLSSSQPKMAKLVEGYISKYGKS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G33835 C3HZnF FES1 FRIGIDA-ESSENTIAL 1, Zinc fing... Potri.011G056600
[exp]
0 1
AT3G58630 Trihelix sequence-specific DNA binding ... Potri.003G118600
[exp]
6.85 0.7144
AT2G16485 nucleic acid binding;zinc ion ... Potri.004G161700
[exp]
7.28 0.8284
Potri.008G016200
[exp]
11.22 0.7896
AT3G51650 unknown protein Potri.016G133700
[exp]
12.84 0.7879
AT1G31930 XLG3 extra-large GTP-binding protei... Potri.015G031100
[exp]
15.49 0.7671
AT1G13220 CRWN2, LINC2 LITTLE NUCLEI2, CROWDED NUCLEI... Potri.008G114800
[exp]
16.43 0.7771
AT4G10090 ELP6 elongator protein 6 (.1) Potri.008G046400
[exp]
17.49 0.7087
AT1G19860 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.005G236300
[exp]
17.77 0.6783
AT3G58110 unknown protein Potri.013G119700
[exp]
20.83 0.7720
AT1G67230 CRWN1, LINC1 CROWDED NUCLEI 1, little nucle... Potri.017G111400
[exp]
22.36 0.7795

Potri.011G056600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.