Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28340 931 / 0 AtRLP4 receptor like protein 4 (.1) AT1G25570 283 / 6e-87 Di-glucose binding protein with Leucine-rich repeat domain (.1) AT2G14440 140 / 1e-34 Leucine-rich repeat protein kinase family protein (.1) AT3G21340 140 / 2e-34 Leucine-rich repeat protein kinase family protein (.1) AT1G49100 139 / 3e-34 Leucine-rich repeat protein kinase family protein (.1) AT2G14510 138 / 6e-34 Leucine-rich repeat protein kinase family protein (.1) AT1G07560 135 / 4e-33 Leucine-rich repeat protein kinase family protein (.1) AT3G46340 134 / 9e-33 Leucine-rich repeat protein kinase family protein (.1) AT3G05990 132 / 9e-33 Leucine-rich repeat (LRR) family protein (.1) AT2G28960 134 / 1e-32 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047300 [exp] 1140 / 0 AT1G28340 928 / 0.0 receptor like protein 4 (.1) Potri.010G129300 [exp] 306 / 2e-95 AT1G25570 852 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Potri.008G117000 [exp] 295 / 3e-91 AT1G25570 816 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Potri.008G150200 [exp] 156 / 7e-41 AT3G05990 634 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G090800 [exp] 147 / 5e-38 AT3G05990 650 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G004700 [exp] 140 / 2e-34 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.002G242700 [exp] 119 / 7e-28 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.009G102300 [exp] 115 / 3e-27 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.013G030800 [exp] 113 / 4e-26 AT2G19210 224 / 2e-63 Leucine-rich repeat transmembrane protein kinase protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015320 [exp] 933 / 0 AT1G28340 895 / 0.0 receptor like protein 4 (.1) Lus10013994 [exp] 931 / 0 AT1G28340 908 / 0.0 receptor like protein 4 (.1) Lus10015417 [exp] 930 / 0 AT1G28340 902 / 0.0 receptor like protein 4 (.1) Lus10041488 [exp] 315 / 1e-98 AT1G25570 880 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Lus10034275 [exp] 310 / 7e-97 AT1G25570 874 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Lus10002456 [exp] 134 / 3e-33 AT3G05990 542 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10025849 [exp] 135 / 5e-33 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10010528 [exp] 109 / 1e-25 AT3G19230 395 / 4e-135 Leucine-rich repeat (LRR) family protein (.1) Lus10025926 [exp] 108 / 4e-24 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019237 [exp] 98 / 6e-21 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.011G056800.1 pacid=42781660 polypeptide=Potri.011G056800.1.p locus=Potri.011G056800 ID=Potri.011G056800.1.v4.1 annot-version=v4.1 ATGCAGAGAATTCCATTTTTATCACGGATTCTTCTGTTCTGCTTAGCTTTCTCTACTTGCTTAGCTAAACAACCACCTTGGGTTATGCGCATAAGTTGTG GAGCTCGGTTAAATGTTCACACAGCACCAACCAATACTCTTTGGTTTAAGGATTTTGCTTATACAGGAGGGATTCCAGCAAATGCTACACTTCCCAGCTA CATCAGTCCTCCACTAAAAACTCTTCGTTATTTTCCCCTATCATCTGGTCCCAATAATTGCTACAATATTAATAACGTGCCAAGCGGACATTATGCTGTA AGGGTCTTCTTTGGACTGGATGGACATCCTAATTTTGATAATGAACCTTTATTTGACATTTCAGTAGAAGGCACCCAAATTTATTCTTTGAAATCTGGGT GGACTAACCAAGATGACCAAGTTTTTACTGAAGCTCTGGTGTTTCTAAATGATGGAACAGCCTCTCTCTGTTTCCATAGCACAGGTCATGGAGATCCAGC TATACTTTCTATTGAGATTCTTCAAGTTGATGATAGAGCATACTATTTTGGCCCAGCCTGGGGTCATGGGATAATCTTGAGAACAGCTGCCAGATTGAGC TGTGGTAATGGGAAACCAAAATTTGATGTTGATTATAGTGGGGATCATTGGGGTGGGGATAGATTTTGGAGTCCAATCAAAACTTTTGGCCAGGGATCTG ATTTAGCTACATCTACTGAAAGTAGCATCAAGATGGCTTCAAATGCACCAAATTTTTATCCAGAAGCTCTTTATCAGACAGCCCTTGTTAGCACCGATAC TCAGCCAGATTTAGCATACACAATGGATGTGGACCCCAATAGAAACTACTCAATTTGGTTACACTTTGCTGAGATTGATTCTTCAGTCACAACTGCAGGG AAAAGGGTATTTGACATTTTGATTAATGGCGATGTTGCATTTGAAGAGGTGGATGTTGTCAAAATGAGTGGGGATCGTTATACTGCTCTTGTACTTAACA CCACAGTTGCTGTAAATGGAAGAGCTCTGACCATCAGCTTGCATCCTAAAGAAGGCAGTCATGCCATAATCAATGCCATTGAGGTGTTTGAGATTGTTGC AGCCGAGTCCAAAACTTTATTGGAAGAAGTTAGAGCCTTACAATCATTGAAGAGTGCATTGGGCCTTCCTCTTCGGTTTGGATGGAATGGTGATCCGTGT GTTCCCCAACAACATCCATGGAATGGAGCAGATTGCCTTTATGACAAAACTAGCAGCAAATGGTTTATTGATGGACTTGGCCTTGACAACCAAGGTTTGA GGGGTTTCTTGCCAAATGACATATCCAGGCTACTTCATTTGCAGAGCATAAACTTGAGTGACAACAGCATCCATGGAGCTATTCCACCATCAATTGGATC AATAGCTGGCCTGGTAGTTCTGGACCTTTCCTACAATCTCTTCAATGGATCAATTCCTGAAAGCCTTGGACAGTTGACATCATTGCGAAGACTGAATCTC AATGGTAACTCTCTGTCTGGAAGAGTCCCAGCAGCACTAGGAGGAAGGCTTTTGCATGGAACTAGCTTCAATTTTACTGATAATGCAGGTCTTTGTGGCA TACCTGGATTGCCTACGTGTGGCCCTCACCTCTCTGCTGGTGCAAAAATTGGTGTTGCATTTGGTGCTTCTGTTGGATTCCTTCTAATGGTTATCTGTTC AATGTGTTGGTGGAAAAGACGACAGAATATTCTCCGTGCACAGAAGATTGCAGCAAGAGGTGCGCCTTATGCAAAAGCAAGGACACATTTATCGCATGAT ATCCAGTTGACAAGGCATTATAATCATGGCAACGCCCGGACAGCTGCTGAGAATGGACCTATCTTACTCTCATGA
AA sequence Show only first row Show all	>Potri.011G056800.1 pacid=42781660 polypeptide=Potri.011G056800.1.p locus=Potri.011G056800 ID=Potri.011G056800.1.v4.1 annot-version=v4.1 MQRIPFLSRILLFCLAFSTCLAKQPPWVMRISCGARLNVHTAPTNTLWFKDFAYTGGIPANATLPSYISPPLKTLRYFPLSSGPNNCYNINNVPSGHYAV RVFFGLDGHPNFDNEPLFDISVEGTQIYSLKSGWTNQDDQVFTEALVFLNDGTASLCFHSTGHGDPAILSIEILQVDDRAYYFGPAWGHGIILRTAARLS CGNGKPKFDVDYSGDHWGGDRFWSPIKTFGQGSDLATSTESSIKMASNAPNFYPEALYQTALVSTDTQPDLAYTMDVDPNRNYSIWLHFAEIDSSVTTAG KRVFDILINGDVAFEEVDVVKMSGDRYTALVLNTTVAVNGRALTISLHPKEGSHAIINAIEVFEIVAAESKTLLEEVRALQSLKSALGLPLRFGWNGDPC VPQQHPWNGADCLYDKTSSKWFIDGLGLDNQGLRGFLPNDISRLLHLQSINLSDNSIHGAIPPSIGSIAGLVVLDLSYNLFNGSIPESLGQLTSLRRLNL NGNSLSGRVPAALGGRLLHGTSFNFTDNAGLCGIPGLPTCGPHLSAGAKIGVAFGASVGFLLMVICSMCWWKRRQNILRAQKIAARGAPYAKARTHLSHD IQLTRHYNHGNARTAAENGPILLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Potri.011G056800 [exp]	0	1
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.001G301800 [exp]	1.41	0.8882
AT4G10390			Protein kinase superfamily pro...		Potri.011G147100 [exp]	5.74	0.8722
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Potri.018G044900 [exp]	8.24	0.8022
AT3G18170			Glycosyltransferase family 61 ...		Potri.012G051500 [exp]	8.36	0.8784
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Potri.009G116700 [exp]	10.00	0.8690
AT3G07340	bHLH	bHLH062	basic helix-loop-helix (bHLH) ...		Potri.002G248500 [exp]	12.84	0.8070
AT5G58520			Protein kinase superfamily pro...		Potri.009G075900 [exp]	14.73	0.8201
AT1G73340			Cytochrome P450 superfamily pr...		Potri.017G154600 [exp]	15.32	0.8101
AT2G12646			PLATZ transcription factor fam...		Potri.006G060500 [exp]	16.24	0.8189
AT2G36080	B3	ABS2, NGAL1	AP2/B3-like transcriptional fa...		Potri.006G208100 [exp]	16.30	0.8166

Compare expression of checked genes

Potri.011G056800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.