Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28380 790 / 0 NSL1 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) AT4G24290 638 / 0 MAC/Perforin domain-containing protein (.1.2) AT1G14780 459 / 5e-155 MAC/Perforin domain-containing protein (.1) AT1G29690 405 / 1e-134 CAD1 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047700 [exp] 1086 / 0 AT1G28380 809 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.003G006500 [exp] 657 / 0 AT4G24290 922 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.019G001000 [exp] 629 / 0 AT4G24290 780 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.001G305600 [exp] 625 / 0 AT4G24290 783 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.008G136401 [exp] 494 / 4e-169 AT1G14780 691 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.010G104600 [exp] 484 / 4e-165 AT1G14780 697 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.002G234700 [exp] 469 / 3e-159 AT1G14780 520 / 8e-179 MAC/Perforin domain-containing protein (.1) Potri.004G064000 [exp] 415 / 1e-138 AT1G29690 901 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.011G075500 [exp] 405 / 1e-134 AT1G29690 890 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025453 [exp] 858 / 0 AT1G28380 745 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Lus10035789 [exp] 635 / 0 AT4G24290 911 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10012717 [exp] 615 / 0 AT4G24290 764 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10010894 [exp] 611 / 0 AT4G24290 761 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10037363 [exp] 566 / 0 AT4G24290 837 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10037426 [exp] 458 / 1e-154 AT1G14780 514 / 2e-176 MAC/Perforin domain-containing protein (.1) Lus10041285 [exp] 456 / 9e-154 AT1G14780 507 / 2e-173 MAC/Perforin domain-containing protein (.1) Lus10029279 [exp] 416 / 6e-139 AT1G29690 868 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10002768 [exp] 406 / 5e-135 AT1G29690 863 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10034586 [exp] 375 / 7e-119 AT1G14780 567 / 0.0 MAC/Perforin domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF01823 [poplar] [flax] MACPF MAC/Perforin domain
Representative CDS sequence Show only first row Show all	>Potri.011G057100.1 pacid=42780314 polypeptide=Potri.011G057100.1.p locus=Potri.011G057100 ID=Potri.011G057100.1.v4.1 annot-version=v4.1 ATGGCATATAATCGGCTTGATGCTCACTCAGCAGCGGAGAAGGCGGTGTCTGTGATTGGATTTGGTTATGATTTGACCAAAGATATTCGATTGTCATATT GCAAGCCAGGTCTTTTTGGGTCTAGATTGATCAAGCTGGACCTCACTCGGAATCAAGAGCTTGTGGTTCCTGGTGGGGTTGTTGTTCAAAACGTGCCTAA TGGTATTAAGTGTGATAAAGGAGAGAGGACTAGGTTTCTCTCTGATGTTCTCTCTTTCAATCAGATGTCGGAGAAATTCAATCAAGAACTGTGTTTATCA GGTAAAATTCCCTCGGGACTGTTCAATACCATGTTTAACTTCAGGGGTAGTTGGCAGAAGGATGCGGCTTCTGCAAAAAGTCTTGCTTTTGATGGTTGGT TCATAACACTATATAACATTGAGTTGGAAAGATCCCATATAACGTTGTCTGAAAAGGTGAAGCAAGAAGTGCCTACTACATGGGATCCTGTTGCCCTTGC TGAGTTTATTGAGAAATATGGCACTCATATTGTTGTCGGGGTAAGGATGGGAGGTAAAGATGTGATACACATGAAGCAGCAACAAAAATCAAATCTTGAG CCCCCTGAAGTGCAGAAATTGTTAAAGGAATATGCTGATAAGCTGTTCTTCGGAGATGTTGACCCTGCTGAATTATCAGGAAAACCAAAGGATGAACACG TTATGCCTTGGGATTTCAATGGAGTATTTGCCCATTCGATGAGGCCGCCTGTCATTACTTCCATAAAGAATGAGGATATAACGAGCATTTGTATCCGAAG GGGAGGTGTGGATGTTGGCCAAAGCCATAACCAGTGGCTCCCAACTATATCACAGTCGCCAAATGTTATTTCAATGTCCCTTGTGCCTATAACTTCTCTT TTGAATGGTATTCGAGGCAACGGATTCGTAAGCCATGCGGTGAATCTCTACCTTCGATACAAACCTCCAATAGAGGAACTTCACCAGTTTTTAGAGTTTC AGTTGCCTCGGCAATGGGCTCCAGTATATGGTGATCTGCCTCTTACTCTTAAGCGCAGAAAACAAGCAACCCCATCTCTTAGGTTCACCTTCATGGGCCC TAAGCTTTATGTCAACACCACACAGGTTGATTCTGGAAATCGGCCAGTGACAGGAATCCGCTTACATTTGGAGGGTAAGAGAAGTGACCATTTGGCTATC CATCTCCAGCATCTTTCCTCTCTTCCCAATATGCTCCAACTCTCAGATGATCGGCTCGAATCAACTCATGAACCTGAAGACCGAGACTATTTTGAACCAG TTCTATGGAGCATATTCTCACATGTCTGCACTGCCCCAGTGGAGTACAATGGTGCCCGCATTGATGACACCGCTTCTATTGTAACAATGGCCTGGTTCGA GGTAAAGGTTGTTGGGATGAAGAAAGTTCTGTTCCTGAGGCTTGGTTTCTCAATGTTGGCATCTGCAAGACTCTGCAGGTCAGAATGGGATGGACCTTCA GCCTTGTCAAGAAAATCGGGGGTCTTCTCGATGTTGATTAGCACTAGGTTTAGTGCAGGATTAAATCCACCCGAGAAGCCAGCTGTGAAAGTAAACCTGA ATTCTGCGGTTTTTCCTGGAGGCCCGCCTTTACCATCAAGAGCACCGAAAATGTCAAACTTTGTGGACACAAAGGAAATGGTGAGAGGTCCAGAGGACCT GCCTGGATATTGGGTGGTCACTGGAGCTAAGCTCTGTGTGGACGGTGGTAGAATCTCAATCAAAGTCAAGTATTCACTGTTAGCCACAATATCAGAGGAG GCAATGATGTTGTTGTAA
AA sequence Show only first row Show all	>Potri.011G057100.1 pacid=42780314 polypeptide=Potri.011G057100.1.p locus=Potri.011G057100 ID=Potri.011G057100.1.v4.1 annot-version=v4.1 MAYNRLDAHSAAEKAVSVIGFGYDLTKDIRLSYCKPGLFGSRLIKLDLTRNQELVVPGGVVVQNVPNGIKCDKGERTRFLSDVLSFNQMSEKFNQELCLS GKIPSGLFNTMFNFRGSWQKDAASAKSLAFDGWFITLYNIELERSHITLSEKVKQEVPTTWDPVALAEFIEKYGTHIVVGVRMGGKDVIHMKQQQKSNLE PPEVQKLLKEYADKLFFGDVDPAELSGKPKDEHVMPWDFNGVFAHSMRPPVITSIKNEDITSICIRRGGVDVGQSHNQWLPTISQSPNVISMSLVPITSL LNGIRGNGFVSHAVNLYLRYKPPIEELHQFLEFQLPRQWAPVYGDLPLTLKRRKQATPSLRFTFMGPKLYVNTTQVDSGNRPVTGIRLHLEGKRSDHLAI HLQHLSSLPNMLQLSDDRLESTHEPEDRDYFEPVLWSIFSHVCTAPVEYNGARIDDTASIVTMAWFEVKVVGMKKVLFLRLGFSMLASARLCRSEWDGPS ALSRKSGVFSMLISTRFSAGLNPPEKPAVKVNLNSAVFPGGPPLPSRAPKMSNFVDTKEMVRGPEDLPGYWVVTGAKLCVDGGRISIKVKYSLLATISEE AMMLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Potri.011G057100 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G212500 [exp]	2.82	0.9504
AT5G12340			unknown protein		Potri.001G276400 [exp]	5.83	0.9435
AT1G19020			unknown protein		Potri.012G075800 [exp]	6.48	0.9317
AT1G30755			Protein of unknown function (D...		Potri.005G240300 [exp]	8.24	0.9140
					Potri.008G212400 [exp]	8.94	0.9315
AT5G37490			ARM repeat superfamily protein...		Potri.008G137700 [exp]	10.39	0.8929
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Potri.010G131500 [exp]	10.72	0.9302
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.013G106200 [exp]	12.64	0.9125
AT2G03550			alpha/beta-Hydrolases superfam...		Potri.009G104000 [exp]	14.07	0.9137
AT2G42360			RING/U-box superfamily protein...		Potri.019G091400 [exp]	15.81	0.9245

Compare expression of checked genes

Potri.011G057100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.