Plant FIBer expression Database

Potri.011G057500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G28400 50 / 4e-07 unknown protein
AT1G03820 45 / 1e-05 unknown protein
AT2G33850 40 / 0.0007 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G048301
[exp]
201 / 6e-64 AT1G28400 45 / 4e-05 unknown protein
Potri.007G137001
[exp]
40 / 0.001 AT1G03820 / unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.011G057500.1 pacid=42782307 polypeptide=Potri.011G057500.1.p locus=Potri.011G057500 ID=Potri.011G057500.1.v4.1 annot-version=v4.1
ATGGCTCCCTCTCCAAGACTCATTTCCTTTCTCTTCCTCCTAGCCATTTTATCTGTGCAAATTCATGCCAGAGAGAGCCAGTTCTTTAGCAAAGTCAGTG
GCGCCACCACCACTCCCTCCACTACCACCATCAGCAACAATAACGCTCAAGATAAAACACTCCCCGGCAAAGAAGAAGAAGAAGGGTTGAGCAAGCAAGA
ACAAGATCCAGCCTTCATCCCAGACAACCAAAATGGTTATGGTCTATATGGTCAAGAAACCACCCAGTTCCCCACCACCACTAAACTAGCTAATGCACCC
TACACTACTACCACTAATTCCCAGCCATACAAGACCCAAACCCAAAACCAAGAAACCTACACCAATTATCCAACTGACACAACCACCAACACAAACACCA
ACTACTACAGCAACAATGCTTATGATCAGGAGCAGCAACAAAACTTCGGTGAAAAAAGCCTTCAAGAAAGTGGATACGCCAACATGGGGAACCAGAACAA
CAACTACTACTACAATGGTGCCAATAGCTACAGCAATGATGAGAAGCAAGGCATGAGTGACACAAGGTACTTGGAAAAAGGGAAGTACTACTATGACCTG
AAGGGGGAGAACAGTAACTACAACCCAAACCAGTACCAGCAGGACTCAAGAAACAACTACAATACTAGAGGTTATTACAGCAACAACAACAACAACGAGA
ACTCCAAGTTCGAGTACAATAACTCCATGCAAAAGTACGACAACCAGGATGATTTCGAAGAGAGCAAGGAAGAGCAGTATGTGCCATGA
AA sequence
>Potri.011G057500.1 pacid=42782307 polypeptide=Potri.011G057500.1.p locus=Potri.011G057500 ID=Potri.011G057500.1.v4.1 annot-version=v4.1
MAPSPRLISFLFLLAILSVQIHARESQFFSKVSGATTTPSTTTISNNNAQDKTLPGKEEEEGLSKQEQDPAFIPDNQNGYGLYGQETTQFPTTTKLANAP
YTTTTNSQPYKTQTQNQETYTNYPTDTTTNTNTNYYSNNAYDQEQQQNFGEKSLQESGYANMGNQNNNYYYNGANSYSNDEKQGMSDTRYLEKGKYYYDL
KGENSNYNPNQYQQDSRNNYNTRGYYSNNNNNENSKFEYNNSMQKYDNQDDFEESKEEQYVP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G28400 unknown protein Potri.011G057500
[exp]
0 1
AT1G28400 unknown protein Potri.004G048301
[exp]
1.41 0.9661
AT4G22250 RING/U-box superfamily protein... Potri.014G158900
[exp]
2.23 0.9458
AT2G36570 Leucine-rich repeat protein ki... Potri.006G117200
[exp]
3.00 0.9529
AT3G42800 unknown protein Potri.018G065000
[exp]
5.19 0.9342
AT3G44610 Protein kinase superfamily pro... Potri.010G236200
[exp]
5.29 0.9469
AT2G44190 EMB3116, EDE1, ... QWRF domain containing 5, EMBR... Potri.016G000300
[exp]
5.47 0.9328
AT1G03820 unknown protein Potri.007G137001
[exp]
7.41 0.9310
AT4G30320 CAP (Cysteine-rich secretory p... Potri.018G096007
[exp]
8.48 0.9360
AT5G26660 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) Potri.012G084100
[exp]
9.79 0.9033
AT3G54950 pPLAIIIbeta, PL... patatin-related phospholipase ... Potri.015G122700
[exp]
10.39 0.9310

Potri.011G057500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.