Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20560 444 / 1e-157 DNAJ heat shock family protein (.1) AT4G28480 429 / 4e-151 DNAJ heat shock family protein (.1.2) AT3G08910 392 / 3e-137 DNAJ heat shock family protein (.1) AT5G01390 387 / 4e-135 DNAJ heat shock family protein (.1.2.3.4) AT1G10350 342 / 3e-117 DNAJ heat shock family protein (.1) AT5G25530 340 / 3e-116 DNAJ heat shock family protein (.1) AT1G59725 333 / 6e-114 DNAJ heat shock family protein (.1) AT3G47940 314 / 4e-106 DNAJ heat shock family protein (.1) AT2G20550 278 / 6e-93 HSP40/DnaJ peptide-binding protein (.1.2) AT1G11040 172 / 7e-50 HSP40/DnaJ peptide-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G016000 [exp] 450 / 2e-159 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 446 / 7e-158 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 445 / 1e-157 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 441 / 4e-156 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 367 / 7e-127 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 344 / 7e-118 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 342 / 3e-117 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 341 / 5e-117 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.015G066100 [exp] 327 / 4e-111 AT3G47940 436 / 5e-154 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017687 [exp] 441 / 4e-156 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10015402 [exp] 436 / 5e-154 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10013981 [exp] 433 / 6e-153 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10005033 [exp] 405 / 6e-142 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 404 / 2e-141 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10030803 [exp] 337 / 3e-115 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10013280 [exp] 337 / 1e-114 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10041254 [exp] 329 / 2e-112 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10036668 [exp] 330 / 6e-112 AT3G47940 454 / 6e-161 DNAJ heat shock family protein (.1) Lus10021961 [exp] 327 / 3e-111 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.011G057601.1 pacid=42782301 polypeptide=Potri.011G057601.1.p locus=Potri.011G057601 ID=Potri.011G057601.1.v4.1 annot-version=v4.1 ATGGGAGTGGATTACTACAACACATTGAAGGTTGACAAGAATGCTAAAGATGAAGACTTGAAGAAGGCTTATAGAAAGCTAGCTATGAAATGGCATCCTG ATAAGAACCCGAATAACAAGAAAGAAGCTGAGGCCAAATTCAAACAGATCTCTGAAGCTTACGAGGTTCTAAGTGATCCTCAAAAGAGAGCAATTTATGA TCAATATGGAGAAGAAGGGCTTAAAGGTCAGGTTCCACCACCAGAAGCTGGTGGTCCAGGAGGAGCAACCTTCTTCTCAACAGGAGATGGGCCGACAACA TTCAGATTCAATCCGAGAAATGCTGATGACATTTTTGCTGAATTTTTCGGCTTCTCGAGTCCATTTGGAGGAATGGGAGGTGGTGGTGGTATGAGGGGTG GTTCAAGGTCATTTGGTGGAATGTTTGGGGATGATATTTTTAGTTCTTTTGGCGAGGCACGTCCAACCAATCCAGCTCCTCGGAAGGCTCCTCCAATAGA GAATACTTTGCCTTGTAGCCTGGAGGAGCTCTACAAGGGGACCACTAAAAAGATGAAGATTTCAAGGGAGATTGTTGATGTTAGTGGGAAAACACTGCCA GTGGAGGAAATCTTGACTATTGATATCAAGCCTGGTTGGAAAAAGGGAACAAAAATAACCTTCCCGGAGAAAGGTAATGAGCAGCCAAATGTTATCCCTG CAGATCTTGTCTTCGTAATCGATGAGAAACCACACAGCACATTCACAAGGGAAGGCAACGATTTGGTTGTGACGAAGAAGATACCTCTTGTGGAAGCTCT AACAGGCTGTACCGTTCATCTCACGACCTTGGATGGGAGGACCCTCACCATCCCCGTCAACAACGTGATTCATCCGAACTATGAGGAAGTAGTCGCCAAG GAAGGTATGCCAATACCGAAGGACCCATCAAAGAGGGGCAACTTGAGAATCAAGTTCGACATCAAATTCCCAACAAGGCTATCTGCTGAGCAGAAGTCAG GAATCAAGAAACTATTAAATTCTTAG
AA sequence Show only first row Show all	>Potri.011G057601.1 pacid=42782301 polypeptide=Potri.011G057601.1.p locus=Potri.011G057601 ID=Potri.011G057601.1.v4.1 annot-version=v4.1 MGVDYYNTLKVDKNAKDEDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYEVLSDPQKRAIYDQYGEEGLKGQVPPPEAGGPGGATFFSTGDGPTT FRFNPRNADDIFAEFFGFSSPFGGMGGGGGMRGGSRSFGGMFGDDIFSSFGEARPTNPAPRKAPPIENTLPCSLEELYKGTTKKMKISREIVDVSGKTLP VEEILTIDIKPGWKKGTKITFPEKGNEQPNVIPADLVFVIDEKPHSTFTREGNDLVVTKKIPLVEALTGCTVHLTTLDGRTLTIPVNNVIHPNYEEVVAK EGMPIPKDPSKRGNLRIKFDIKFPTRLSAEQKSGIKKLLNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20560			DNAJ heat shock family protein...		Potri.011G057601 [exp]	0	1
AT4G02890		UBQ14	Ubiquitin family protein (.1.2...		Potri.017G135600 [exp]	2.00	0.9785	Pt-SUBI.8
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Potri.017G130700 [exp]	3.16	0.9832
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Potri.010G088600 [exp]	6.00	0.9819
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Potri.004G157100 [exp]	6.63	0.9642	APL3.1
AT3G14075			Mono-/di-acylglycerol lipase, ...		Potri.003G067900 [exp]	7.34	0.9338
AT3G08970		TMS1, ATERDJ3A	THERMOSENSITIVE MALE STERILE 1...		Potri.016G120000 [exp]	8.12	0.9776
AT3G07090			PPPDE putative thiol peptidase...		Potri.002G241700 [exp]	8.36	0.9777
AT2G20560			DNAJ heat shock family protein...		Potri.007G136266 [exp]	8.48	0.9664
AT3G20940		CYP705A31P, CYP...	"cytochrome P450, family 705, ...		Potri.016G093550 [exp]	10.09	0.9041
AT1G53540			HSP20-like chaperones superfam...		Potri.001G238700 [exp]	11.61	0.9756	Pt-HSP17.13

Compare expression of checked genes

Potri.011G057601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.