Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28420 1262 / 0 HD HB-1 homeobox-1 (.1) AT5G44180 1112 / 0 HD Homeodomain-like transcriptional regulator (.1.2) AT4G12750 135 / 2e-31 Homeodomain-like transcriptional regulator (.1) AT4G03250 74 / 4e-13 HD Homeodomain-like superfamily protein (.1) AT5G08630 54 / 7e-07 DDT domain-containing protein (.1) AT4G00730 46 / 0.0002 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G17920 46 / 0.0003 HD HDG12 homeodomain GLABROUS 12 (.1) AT4G25530 45 / 0.0006 HD HDG6, FWA HOMEODOMAIN GLABROUS 6, FLOWERING WAGENINGEN (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G048675 [exp] 2584 / 0 AT1G28420 1266 / 0.0 homeobox-1 (.1) Potri.017G016200 [exp] 1367 / 0 AT5G44180 1322 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.007G135500 [exp] 1362 / 0 AT5G44180 1226 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.014G173300 [exp] 166 / 3e-41 AT4G12750 1038 / 0.0 Homeodomain-like transcriptional regulator (.1) Potri.009G071700 [exp] 72 / 1e-12 AT4G03250 303 / 5e-97 Homeodomain-like superfamily protein (.1) Potri.001G276800 [exp] 71 / 6e-12 AT4G03250 275 / 2e-86 Homeodomain-like superfamily protein (.1) Potri.004G138900 [exp] 52 / 4e-06 AT5G08630 652 / 0.0 DDT domain-containing protein (.1) Potri.019G008541 [exp] 49 / 5e-05 AT5G08630 683 / 0.0 DDT domain-containing protein (.1) Potri.003G096000 [exp] 48 / 9e-05 AT5G46880 873 / 0.0 HOMEODOMAIN GLABROUS 5, homeobox-7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015325 [exp] 1446 / 0 AT1G28420 1273 / 0.0 homeobox-1 (.1) Lus10025454 [exp] 1406 / 0 AT1G28420 1275 / 0.0 homeobox-1 (.1) Lus10039870 [exp] 1219 / 0 AT5G44180 1398 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10018634 [exp] 1217 / 0 AT5G44180 1391 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10015400 [exp] 177 / 1e-49 AT1G28420 166 / 6e-47 homeobox-1 (.1) Lus10013979 [exp] 171 / 2e-47 AT1G28420 161 / 4e-45 homeobox-1 (.1) Lus10017688 [exp] 146 / 1e-38 AT5G44180 148 / 4e-40 Homeodomain-like transcriptional regulator (.1.2) Lus10033644 [exp] 142 / 4e-37 AT1G28420 148 / 4e-40 homeobox-1 (.1) Lus10012302 [exp] 150 / 7e-36 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10016078 [exp] 145 / 2e-34 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02791 [poplar] [flax] DDT DDT domain CL0123 [poplar] [flax] HTH PF05066 [poplar] [flax] HARE-HTH HB1, ASXL, restriction endonuclease HTH domain CL0123 [poplar] [flax] PF15613 [poplar] [flax] WSD Williams-Beuren syndrome DDT (WSD), D-TOX E motif
Representative CDS sequence Show only first row Show all	>Potri.011G057700.5 pacid=42780822 polypeptide=Potri.011G057700.5.p locus=Potri.011G057700 ID=Potri.011G057700.5.v4.1 annot-version=v4.1 ATGGAGGAGGCGAATTCGGAAGGAGAAAATCACAGCAAATCGAAGAGTAATGCTATGAATTCTAATGAAGGTCAAAGCAAGCCTAAACGACAGATGAAGA CTCCTTTCCAACTCCAAACCCTCGAGAACGCTTATGCCACGGACACATATCCGTCCGATGAGATGCGGGCTGAGTTGTCGGAGAAATTAGGACTATCTGA TAGGCAGTTGCAGATGTGGTTTTGCCACAGGAGATTGAAAGACAGAAAGGAGAATCTGGTAAAGCACCGGAAAGCAGCTCCATTGCCCGGGTCTCCTTTG GAGGATATGAGGATAGTGAGGGCTGACAGTGGGAGTGATTATGGGTCCGGGTCCGTTTCGGGTTCTAGTCCGCTTTCTGAGTCAAGAAAGGTGGTTTTGG ATGATGGCCATAAGGTGAGAAGACACTACGAGTCATCACCCCGATCAGTTACGGAGCTTAGAGCTATTGCTTGTGTGGAGGCACAACTTGGAGAGCCATT GAGGGAGGATGGACCAATTCTCGGAATGGAGTTTGATCCTTTGCCACCTGATGCGTTTGGGGAACCCATAGCTGCAATTACAGAACAACCAAAGCGAATG GGGTATTCTTATGAGGACAAAGTATATGAGCGACGTGATGCTAAATCAAGCAAAGTAGATCCGGCCAGTATTCGATCTGATACATATGGACCGCATATCC AATCTCCTTATCATGATTCGCCAGTTGACACTTTGAGGGGAAGAGCTTCACCATTTGGTGTAGGCCAAATACCACGTGCTCGCCTTTTGTCTCAACAAGA CAAGAGGGGGCATGTGTTTTCATCAACTCAAAGGGATGGTGACTATCTCTTGCAACAAGACACCTTTACAAAAAATAGAACAAGTGCTCAATCTATTAGT CATCCTATTATGGGACCAGAAAATCCAAATGTCTTTTCTGATGCACAAACCTTCCACAATGACACTGAGCTGCAGTTGGAAAGGAAACACAAGATCGATG AACCTAGAACTGCAAGAGAAGTTGAAGCTTATGAGATTCGGACACGCAAAGAGCTTGAGAAACAAGATATTTTAAGGCGGAAGAATGAAGAACGGATGAA GAAAGAGATGGAAAGGCTTGACCGTGAGAGACGAAAAGAAGAAGAGAGATTAATGCGTGAAAAGCAAAGAGAGGAGGAGAGATCACTTCGGGAGCAAAAA CGTGAACTTGAGCGAAGAGAAAAGTTTATGCAGAAAGAGTATTTAAGAACTGAGAAAATAAGGCAAAAAGAAGAGCTTCGTAGAGAGAAAGAGGCAGTGA AACGCAAAGCTGCCATGGAGAAAGCAACTGCACGCAAGATCGCTAAAGACTCTTTGGATCTAATTGAGGATGAACAGCTAGAACTCATGGAATTGATTGC TGCAAGCAAAGGCTTAGCCTCAATAGTTAACCTCAACTATGATACTTTGCAAAATCTCGATTCATGTAGAGACTTGTTGATCACATTCCCATCTGAGGCC GTGCAATTAAAAAAATCATTTGGATTTCAACCTTGGTTAGATTCTGAAGAAAATATTGGGAATCTTCTGATGGTCTGGAAGTTTTTTATTACTTTTGCTG ATGTCCTTGGGCTATGGCCATTTACACTCGATGAGTTTGTTCAAGCTTTCCATGACTATGATTCAAGATTGCTTGGTGAATTACATGTTGCTCTTCTGAA ATTAATAATTAAAGACATTGAAGATGTTGCTAGGACACCATCTAGTGGATTAGGGATAAATCAATATTATACAGCCAATCCTGAAGGCGGACATCCACAA ATTGTTCAAGGGGCGCATACATGGGGCTTTGATATACGCAACTGGCAGCAACACTTAAATTCATTAACATGGCCCGAAATACTCCGGCAATTGGCATTGT CTGCAGGGTTTGGGCCACGGTTGAAGAAAAAGTGTGCAACATGGGCAGGTTTGGGTGATATTGATGAGTTGCAGGTTAAAGATTGTGAAGATATTGTTTC TATTATACGCAACGGATCAGCAGCTGAAAATGCATTTGTGTTAATGCGAGAAAAGGGTTTGTTGCTTCCTAGAAGATCCAGGCATCGGTTGACACCTGGA ACTGTTAAGTTTGCAGCTTTTCATGTTCTTTCTCTTGAAGGTAGCAAAGGATTAACAGTGCTAGAACTTGCAGACAGGATTCAGAAATCTGGACTTCGAG ACCTGACAACAAGCAAGACGCCAGAGGCATCTATTTCTGTTGCTTTGACAAGGGATCAAAAGCTTTTTGAAAGAATTGCTCCTTCAACATATTGTGTACG GGCAGCTTTCAGAAAGGATCCTGCTGATGCTGAGGCGATACTTGCAGAAGCCAGAAAGAAAATTAGAATATTTGAAAATGGATTTTTAGGTGGAGAAGAT GCTGATGATGTTGAAAGAGATGAGGACTCTGAAGGAGATGCTGATGAGGATCCTGAAGTTGATGATTTAGCCACTCCAATAAGTTCTAACAAAAGCACTG TCCATTCTAGCAAAGTAAATGCTTTATCTGGGAGTGGAAGTGGTAAAGTCAGTAATGACGCTTCATTAACTGTACAAAATAAGTGTGAGAAAGGTCTTTC ATCTTTCTCTTTGAATGGCCCAAAGGATGCAGTGGCTCCTAGTATCATTGAGCAGTGTGTTACTCATAAAGATGAGGGGACTAATAATGCAGATGAAGAA AATATTGAAATTGATGAAAACAACTCAGGTGAATCATGGATTCAGGGACTCACTGAAGGGGAATATTCTCATCTCAGTGTCGAAGAACGTCTTAGTGCCC TTGTTGTGTTAGTTGGTATTTCGAACGAAGGGAATTCCATCCGTGCTGTTCTTGAGGATCGTTTGGAAGCTGCAAATGTTCTTAAAAAGCAAATGTGGGC TGAGGCACAATTAGATAGAAGTCGGTTGAAAGAAGAGTTCATCAGTAAATTAGATTTTCCATCTTTTACTGGGGGAAAAGTTGAAACACAAGTCACTAGT TCTGCTGTGGAGGGCAGCCAAAGCCCCTTGGTTCTTGTTGATGGCAAAAATAAGGAAGCATCTCCAAGTAATGCTGAGGATCAGAAACCATTGCCAGAAG ATGCAGAGAATCATGGAAGCTGTGCTCTTTCTGAGAAAGCTTTGGTTATTCAAGATCTTTCCTTGAATCCAGATAACATTTCAGCTCAGCAGCATGGATA TGCTTCAAAAAGGTCCCGTTCACAATTGAAAGCTTATATTGCCCACCTAGCAGAAGAGATGTGTATTTACAGGTCCTTGCCCCTTGGCCAAGATCGCAGA CGTAATAGGTACTGGCAGTTTGTGGCATCTGCTTCTAGAAATGATCCTTGTTCTGGTAGGATCTTCGTAGAATTACATGATGGAAATTGGAGGGTTATTG ATTCGGAAGAGGCTTTTGATACACTTTTATCATCTTTGGATACACGTGGGGTTAGGGAATCTCATTTGTGTATAATGTTGCAAAAGATTGAATTATCTTT CAAAGAAAATGTTCGAAGGAACTTGGGATCTGCAAACATTGTGTGCCAAAGTGGAACCACAGATGAAAAAGAAACAGCTGAAACAGACACTGCTGATTGC CCAGCAGACGACAGCCCTAGCAGTATGGTTTGTGTTTCCAGCTCAGATACTTTGGATGCTTTTTCTTTGTTTAGTATTGAGCTTGGCAGAAATTCAGCAG AGAAGAAGGGTGCTCTGAAAAGGTACCAGGATTTTCAGAACTGGATGTGGAAAGAGTGCTTTAATTCCTCAACGTTATGTGCCGTGAAATATGGAAAGAA AAGATGTGAGCAATTATTGGACACTTGTGACCTGTGTCTTGACACTTATCTCTCTGAAGACCCCCACTGTCTTTCTTGCCACCAAACATTTAAATTTGAA AACAAGAAATTTGATTTTGCTGAACATGAGATTCAATGCAAAAAGAAAAGGAAGATTGATCCTGGAAATGCATGTACTTGTGATTCTTCTTTACCTCCAG GAACCAGATTGCTGACGGCACTTTTAAGTTGCATTGAGGTATCTGTTCCGCAAGAAGCTCTTGAGTCATTTTGGATGGGAATCCCCAGGAAGGACTGGGG TATGAAGTTGGCAATGCCATCATCAACTGAGGAACTCCTGCAGATATTGACCGTGTTTGAGAGTGCCATAAAAAGAGAGAGATTGTCATCGAATTTTGAG ATGACTAAAGAATTATTGGGCTCCTCTGCATTGTCAGGGAGTGCAGCACATGATTCTGCTAGTCTGGGATTGGTTCCTGTACTTCCATGGATGCCAAAAA CCACTGCAGCTGTGGCCCTGAGGCTTTTTGAGCTAGATGCATCTATTATTTATGTAAAGAATGAGAAACCCAAGCCCTCTGCAGACAAACCAGTCAAACT ATATATGAAGCTTTCTTCAAGATATTCTCCCTTTAAGAATGAAGATGTTGAATTAAAAGATACAAAGCAAGAAGAGCACATTAAAGAAGATATTGTTGAT CTACGTGGTAAGCAGAGCAGTTATAAACGTGGACGAGGGAGGCGCGATCAAGGACTTGCAACAAAGTGGCAGAGAAGAATGCCTGGTTTAAAATCTGATA CAGGCAGGAAGAGTTCTTCCAGGGGAACTCAGAATTTGAATCAAGGACCAAGGCAGCAGGGGAAAAAAACAAATTTGCAAGCAACTAGTCGGGGTCGACG TACAGTAAGGAAGAGGAGAGTGGAAAAGATGCAACCCAAGGAGCCCTTGCTTGGTCGGATGACTGACAAGGTTGCCTCCACGAGCTACCTATCGAAAAAA TCAGCTGTCCACAACAACTATGTTAAATCATTTGGAAACATTGGTGATGAAGATTGGAGTGTTAAAAAGGGCAGGATGAATGGTGATGATAATAGCAACA TTATGGAAGAAGCAGAATCTGATGATAATGTTGAAGAGGTATATGGGCAAGGAAATTGGGAACCAGGTTTCAGTGGCATTTCCAATGGTTGGAATAGAAA TCCAATGGAGGTGAGTGATGATGATGCAAATGTTTCTAACGGCATTGAAGCTATGGGAGATGATGATTCAGAGGGGGACATGGAAATGAGTGATGGATCA GACAGGGCTGCCAATCGGGTGCAGAGTGATGAAGGTATGGACTCTGCGGATTCAGACGAGTACAGTGACTGA
AA sequence Show only first row Show all	>Potri.011G057700.5 pacid=42780822 polypeptide=Potri.011G057700.5.p locus=Potri.011G057700 ID=Potri.011G057700.5.v4.1 annot-version=v4.1 MEEANSEGENHSKSKSNAMNSNEGQSKPKRQMKTPFQLQTLENAYATDTYPSDEMRAELSEKLGLSDRQLQMWFCHRRLKDRKENLVKHRKAAPLPGSPL EDMRIVRADSGSDYGSGSVSGSSPLSESRKVVLDDGHKVRRHYESSPRSVTELRAIACVEAQLGEPLREDGPILGMEFDPLPPDAFGEPIAAITEQPKRM GYSYEDKVYERRDAKSSKVDPASIRSDTYGPHIQSPYHDSPVDTLRGRASPFGVGQIPRARLLSQQDKRGHVFSSTQRDGDYLLQQDTFTKNRTSAQSIS HPIMGPENPNVFSDAQTFHNDTELQLERKHKIDEPRTAREVEAYEIRTRKELEKQDILRRKNEERMKKEMERLDRERRKEEERLMREKQREEERSLREQK RELERREKFMQKEYLRTEKIRQKEELRREKEAVKRKAAMEKATARKIAKDSLDLIEDEQLELMELIAASKGLASIVNLNYDTLQNLDSCRDLLITFPSEA VQLKKSFGFQPWLDSEENIGNLLMVWKFFITFADVLGLWPFTLDEFVQAFHDYDSRLLGELHVALLKLIIKDIEDVARTPSSGLGINQYYTANPEGGHPQ IVQGAHTWGFDIRNWQQHLNSLTWPEILRQLALSAGFGPRLKKKCATWAGLGDIDELQVKDCEDIVSIIRNGSAAENAFVLMREKGLLLPRRSRHRLTPG TVKFAAFHVLSLEGSKGLTVLELADRIQKSGLRDLTTSKTPEASISVALTRDQKLFERIAPSTYCVRAAFRKDPADAEAILAEARKKIRIFENGFLGGED ADDVERDEDSEGDADEDPEVDDLATPISSNKSTVHSSKVNALSGSGSGKVSNDASLTVQNKCEKGLSSFSLNGPKDAVAPSIIEQCVTHKDEGTNNADEE NIEIDENNSGESWIQGLTEGEYSHLSVEERLSALVVLVGISNEGNSIRAVLEDRLEAANVLKKQMWAEAQLDRSRLKEEFISKLDFPSFTGGKVETQVTS SAVEGSQSPLVLVDGKNKEASPSNAEDQKPLPEDAENHGSCALSEKALVIQDLSLNPDNISAQQHGYASKRSRSQLKAYIAHLAEEMCIYRSLPLGQDRR RNRYWQFVASASRNDPCSGRIFVELHDGNWRVIDSEEAFDTLLSSLDTRGVRESHLCIMLQKIELSFKENVRRNLGSANIVCQSGTTDEKETAETDTADC PADDSPSSMVCVSSSDTLDAFSLFSIELGRNSAEKKGALKRYQDFQNWMWKECFNSSTLCAVKYGKKRCEQLLDTCDLCLDTYLSEDPHCLSCHQTFKFE NKKFDFAEHEIQCKKKRKIDPGNACTCDSSLPPGTRLLTALLSCIEVSVPQEALESFWMGIPRKDWGMKLAMPSSTEELLQILTVFESAIKRERLSSNFE MTKELLGSSALSGSAAHDSASLGLVPVLPWMPKTTAAVALRLFELDASIIYVKNEKPKPSADKPVKLYMKLSSRYSPFKNEDVELKDTKQEEHIKEDIVD LRGKQSSYKRGRGRRDQGLATKWQRRMPGLKSDTGRKSSSRGTQNLNQGPRQQGKKTNLQATSRGRRTVRKRRVEKMQPKEPLLGRMTDKVASTSYLSKK SAVHNNYVKSFGNIGDEDWSVKKGRMNGDDNSNIMEEAESDDNVEEVYGQGNWEPGFSGISNGWNRNPMEVSDDDANVSNGIEAMGDDDSEGDMEMSDGS DRAANRVQSDEGMDSADSDEYSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28420	HD	HB-1	homeobox-1 (.1)		Potri.011G057700 [exp]	0	1
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Potri.008G080900 [exp]	2.00	0.9029
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.002G160900 [exp]	5.47	0.8906
AT3G50370			unknown protein		Potri.005G137700 [exp]	6.32	0.8922
AT5G42950			GYF domain-containing protein ...		Potri.002G262300 [exp]	6.92	0.8714
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.014G189900 [exp]	7.07	0.8751
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.007G113300 [exp]	7.21	0.8783	HAF902
AT1G28420	HD	HB-1	homeobox-1 (.1)		Potri.004G048675 [exp]	7.74	0.8443
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Potri.001G359700 [exp]	10.19	0.8470	TOP1.1
AT5G53430		SET29, ATX5, SD...	SET domain group 29 (.1)		Potri.015G014300 [exp]	11.83	0.8467	SDG29.1
AT4G32160			Phox (PX) domain-containing pr...		Potri.006G256000 [exp]	12.80	0.7810

Compare expression of checked genes

Potri.011G057700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.