Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46100 627 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 254 / 2e-77 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 244 / 6e-73 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G48810 228 / 2e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 225 / 1e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G18475 219 / 2e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 220 / 6e-64 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16420 214 / 2e-63 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12300 212 / 1e-61 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 208 / 1e-60 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G075900 [exp] 253 / 7e-77 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G148700 [exp] 248 / 5e-75 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G154800 [exp] 248 / 8e-75 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 237 / 3e-70 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 237 / 5e-70 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G031600 [exp] 227 / 3e-68 AT5G16420 707 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.009G105600 [exp] 225 / 8e-66 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 223 / 9e-66 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.014G105900 [exp] 218 / 3e-65 AT4G01400 576 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015397 [exp] 657 / 0 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013972 [exp] 575 / 0 AT5G46100 520 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 247 / 2e-74 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 248 / 4e-74 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 244 / 2e-73 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 232 / 4e-68 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 229 / 5e-67 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 231 / 1e-66 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005989 [exp] 213 / 7e-63 AT5G16420 656 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10006373 [exp] 216 / 2e-62 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.011G057900.1 pacid=42780351 polypeptide=Potri.011G057900.1.p locus=Potri.011G057900 ID=Potri.011G057900.1.v4.1 annot-version=v4.1 ATGGGCATGAAAACATTGCTTAAATGGTCAAAACAAATCACCCCATCTAAAGTTGAGCAACTACTTAGAGCAGAAAGGGACTTACGCAAAGCTAAAATCA TATTTGATTCCGCAAGCGCGGAATACAGCAATGGTTTTAGGCATGATCACACCACGTTTGGCGTCATGATCTCTAAATTAGTCTCCGCGAATGAGTTCAG GCCCGCAGAGGAAATGCTTAATAGAATGAAGGAAGAGAAGTGCAGAATTACTGAGGAGATATTCCTTTCAATTTGCAGAGGCTATGGCCGGGTTCATATG CCATTAGATGCCATCAGGGTTTTTCATAAAATGAATGACTTTGGGTGCAAACCCACTGACAAGTCTTACATCAGTGTATTTGCTATTCTTGTTGAAGAGA ATCAGTTAAAGGTTGCGATGAGTTTTTATAAGTATATGAGGGAAATGGGTGTTCGGCAGAGTGTTGTTTCGCTTAATGTTTTGATTAAAGCCCTTTGTAA GAATAGCGGAACGATTGATGCTGCTTTTGAGATATTTCGTGAGATGCCAAAACGCGGGTGTGATCCGGATTCGTATACGTATGGTACGCTAATTAATGGT TTGTGTAAGTTGGGTAAGACTTTTGAAGCCAAGGAGTTGTTTAAAGAGATGGATACAAAAGGATGTTCACCGTCCGTTGTCACGTACTCTTGTTTGATGC ATGGCTTGTGCCAGGCTGGTAACGTGGATGAAGCTATGGGATTGTTTGATAAGATGAAGAAAAAAGCCATTGAGCCAAATGTGTTTACCTATAGTTCTTT AATGGATGGTCTTTGCAAGAATGGGGGTTCTTTAGAAGCCATGGAGCTACTAGAGATGATGGTCAGGAAGCGCCATAAGCCTAATATGGTAACATATAGT ACGTTAATTAATGGGCTCTGTAAAGAAGGAAAACTTGCTGAAGCTGTGGAGACTCTTGACAGGATGAAGCTTCAGGGATTGAAACCAGATGCAGGGCTCT ATGGAAAAATCATAAATGGGTTCTGCAATATTCGCAAGTTCCAGGAGGCTGCAACCTACCTTGATGAGATGGTTCTAGGGCAGATCTCACCAAACCGAGT AACTTGGAGCCTTCATGTTAAGCTTAATAATATGGTAGTCCAAGGCCTTTGTACAAATGGCAACCTGAATAGATCCTTTCAGTTGTACATAGGTATGCGC ACTAGGGGTATCTCAATTGATGCTGGGACCTTTGATTCTCTTGTGAAATGTTTCTGCAAGAAAGGGGACTTGCATAAAGCTGCTCGCATTTTTGATGAGA TGGTGCTCGATGGATGTGTTCCTGACCATGGAATATGGAGTGCTGTGGTTGGTGGATTTTGGGATAGAAGAAAGGTCCGGGAAGCTTTTGAGTCGATAGT GGTTGAACTAATGAATGAATTTGTTGAGCATGTATAG
AA sequence Show only first row Show all	>Potri.011G057900.1 pacid=42780351 polypeptide=Potri.011G057900.1.p locus=Potri.011G057900 ID=Potri.011G057900.1.v4.1 annot-version=v4.1 MGMKTLLKWSKQITPSKVEQLLRAERDLRKAKIIFDSASAEYSNGFRHDHTTFGVMISKLVSANEFRPAEEMLNRMKEEKCRITEEIFLSICRGYGRVHM PLDAIRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLING LCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYS TLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMR TRGISIDAGTFDSLVKCFCKKGDLHKAARIFDEMVLDGCVPDHGIWSAVVGGFWDRRKVREAFESIVVELMNEFVEHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46100			Pentatricopeptide repeat (PPR)...		Potri.011G057900 [exp]	0	1
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G083800 [exp]	1.41	0.9505
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.004G147700 [exp]	1.73	0.9535
AT2G44880			Pentatricopeptide repeat (PPR-...		Potri.014G046200 [exp]	3.00	0.9440
AT1G73710			Pentatricopeptide repeat (PPR)...		Potri.013G144800 [exp]	3.31	0.9314
AT4G02750			Tetratricopeptide repeat (TPR)...		Potri.012G048800 [exp]	3.60	0.9292
AT3G25060			Tetratricopeptide repeat (TPR)...		Potri.002G245200 [exp]	3.74	0.9285
AT5G19020		MEF18	mitochondrial editing factor ...		Potri.010G029900 [exp]	4.58	0.9370
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	4.89	0.9423
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.010G035700 [exp]	5.47	0.9419
AT2G03880		REME1	required for efficiency of mit...		Potri.004G208000 [exp]	8.00	0.9367

Compare expression of checked genes

Potri.011G057900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.