Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28440 1310 / 0 HSL1 HAESA-like 1 (.1) AT4G28490 951 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 698 / 0 HSL2 HAESA-like 2 (.1) AT1G09970 619 / 0 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 613 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 608 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G75820 594 / 0 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G49660 587 / 0 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G72180 577 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G25930 572 / 0 Protein kinase family protein with leucine-rich repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G049100 [exp] 1613 / 0 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.007G135400 [exp] 1134 / 0 AT1G28440 1109 / 0.0 HAESA-like 1 (.1) Potri.017G016600 [exp] 1122 / 0 AT1G28440 1130 / 0.0 HAESA-like 1 (.1) Potri.009G081800 [exp] 668 / 0 AT1G09970 1033 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.002G106800 [exp] 647 / 0 AT1G09970 1204 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.007G009200 [exp] 635 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.006G235800 [exp] 629 / 0 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G057100 [exp] 611 / 0 AT5G25930 1034 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.003G157300 [exp] 609 / 0 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013968 [exp] 1256 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 1253 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10018636 [exp] 1083 / 0 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10039872 [exp] 858 / 0 AT1G28440 942 / 0.0 HAESA-like 1 (.1) Lus10007232 [exp] 634 / 0 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10028232 [exp] 627 / 0 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10006028 [exp] 612 / 0 AT5G25930 1116 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10019248 [exp] 611 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10005491 [exp] 605 / 0 AT5G25930 1104 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10039641 [exp] 598 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G058100.2 pacid=42781912 polypeptide=Potri.011G058100.2.p locus=Potri.011G058100 ID=Potri.011G058100.2.v4.1 annot-version=v4.1 ATGCTTCTCTTCGTTTTCCTTTCCATCCTCTTCTTTCCTTCCTCTACCCTTTCTCTGAACCAAGAAGGGCTTTACCTCCAACAAATAAAGCTCTCTCTTT CAGACCCAGACTCAGCTCTCTCTTCGTGGTCCGACAGAGACACCACCCCATGTTCATGGTCCGGCATCAAATGTGACCCAACAACAAGCTCTATAACGTC CATAGACTTGTCCAACTCTAACGTGGCTGGCCCTTTCCCTTCCCTCCTTTGCCGTCTCCAAAACCTTACTTCCCTCTCCTTCTCCATCAACAACATCAAC TCCACTCTCCCTTTAGATATCTCCACGTGTCAAAATCTCCAACACCTTGATCTTTCTCAAAATCTGCTTACAGGCACTCTCCCCCACACCTTAGCTGACC TCCCTAACCTTAGATACCTTGACCTTACAGGAAACAATTTCTCAGGAGACATTCCCGATACTTTCGCTCGTTTTCAAAAACTCGAGGTTATTTCTCTCGT TTACAATCTCATGGACGGTATAATACCGCCTTTTTTGGGCAACATTACAACTCTCAGAATGCTCAATTTATCGTACAACCCGTTTACGCCGGGTCGGGTC CCTCCCGAATTTGGTAACTTGACAAACCTGGAGACTTTGTGGCTCACTCAGTGTAATTTAAATGGCGAAATCCCTGACTCACTGGGTCGACTCAAGAAAC TCAAGGATTTAGACCTTGCACTCAACAATCTTGGCGGTTCTATCCCGGGTTCACTCACTGAGTTGACCAGCGTAGTCCAAATTGAGCTCTACAACAACTC GTTGACGGGTGGTTTGCCTCGGGGGCTGGGGAAGCTGACCGAGTTAAAGCGGCTCGACGTGTCAATGAACCGGTTAACTGGGTGGATCCCAGACGAGTTG TGTCAGTTGCCGTTAGAGAGTCTCAATCTTTACGAGAATGGCTTTACAGGGACGTTGCCTGCAAGCATAGCTGACTCACCGAGCTTATACGAACTCAGGC TGTTTCAAAACAGACTCACTGGCGAGTTGCCTCAAAATCTCGGCAAAAACGCGCCATTAAGATGGATAGACGTGTCAAACAATGACTTAACCGGACAAAT TCCGGCAAGTTTATGTGAGAATGGCGAGTTAGAGGAGATTTTGATGATATACAACTCGTTTTCAGGTCAAATACCGGAAAGTTTGAGTCAATGCCGGAGC TTGACCCGGGTCCGGCTGGGATATAACCGGTTATCCGGCGAAGTGCCAGCTGGGCTTTGGGGTTTGCCTCATGTTTCGTTGTTTGATCTTTTCAATAATT CATTTTCAGGTCCGATTTCGAAAACAATTGCTAGTGCTGCAAATTTGTCAAAGTTGATTATTGATATGAATAACTTTGATGGGAACATACCGGAGGAGAT TGGGTTTTTAGCGAATTTATCTGAGTTTTCGGGTAGTGAAAATAGGTTTAATGGATCATTGCCTGGGAGTATAGTGAATTTGAAGGAGCTTGGAAGTTTG GATCTTCACGGGAATGCCCTTTCGGGTGATTTACCGGATGGGGTTAATTCGTGGAAGAAAATGAATGAGCTAAATTTGGCTAGCAATGCTTTTTCTGGGA ATATTCCTGATGGAATTGGAGGAATGTCTCTGCTTAATTATCTTGATTTGTCGAATAATAGGCTTTCGGGGAAAATCCCAATTGGTTTGCAGAATTTGAA GTTAAATAAGCTCAATTTGTCGAATAATAGGTTGTCAGGAGGGATTCCGCCATTGTTTGCCAAGGAGATGTACAAGAGTAGCTTTGTTGGGAATCCTGGT TTGTGTGGTGATATTGAGGGGTTGTGTGATGGGAGGGGTGGCGGGAGAGGTATAGGTTATGCTTGGTCGATGAGGTCTATTTTCGCACTTGCTGTGTTTC TTCTTATTTTTGGTGTGGTTTGGTTTTATTTCAAGTATAGGAATTTCAAGAAAGCAAGGGCTGTTGATAAGTCGAAATGGACTTTGATGTCGTTTCATAA TCTGGGTTTTAGTGAATACGAGATCTTGGATTGTCTTGATGAGGATAATGTTATAGGGAGTGGATCGTCTGGGAAAGTTTACAAGGTTGTGCTTAGCAAT GGTGAGGCTGTTGCAGTGAAGAAGCTCTGGGGAGGCCAGAAAAAACAGGGTGGCGATGTTGATGTTGAGAAAGGTCAGGTGATTCAAGATAATGGTTTTG ATGCAGAGGTTGCAACTCTGAGTAAGATTAGGCACAAGAACATTGTTAAGCTATGGTGTTGCTGTACTACCAGAGACTGCAACCTTTTGGTGTATGAATA CATGTCTAATGGTAGCTTGGGTGACCTGTTGCATAGTAGTAAGGGAGGGTTGTTAGATTGGCCAACAAGGTACAAGATAGTTGCTGATGCAGCTGAGGGA CTTTCTTATTTGCACCATGATTGTGTTCCCCCGATTGTGCATAGAGATGTGAAGTCCAACAATATATTACTGGATGGTGATTATGGAGCTCGGGTGGCTG ATTTCGGTGTAGCCAAAGTCTTTGAATCTACTGGGAAGCTTAAATCCATGTCAATCATTGCAGGGTCTTGTGGTTACATTGCTCCAGAGTATGCATACAC CCTTCGAGTGAATGAAAAGAGTGACATCTACAGCTTCGGTGTGGTTATTCTCGAGTTGGTAACCGGTAAACGCCCAGTCGATCCGGATTACGGGGAAAAG GACTTGGTCAATTGGGTATGCACCACTCTAGATCTGAAAGGAGTGGACCATGTTATTGACCCAAGACTTGATTCTTGTTTCAAGGAAGAGATATGCAAAG TCCTCAACATTGGCATCCTCTGCACTAGTCCCCTTCCCATCAACCGCCCATCGATGAGAAGGGTGGTAAAAATGCTGCAAGAAATCGGGGCAGACAATCA GTCCAAGACCGCTAAAAAAGACGGCAAGTTGACACCTTATTACTTTGAAGATGCCTCAGATCATGGGAGTGTAGCTTGA
AA sequence Show only first row Show all	>Potri.011G058100.2 pacid=42781912 polypeptide=Potri.011G058100.2.p locus=Potri.011G058100 ID=Potri.011G058100.2.v4.1 annot-version=v4.1 MLLFVFLSILFFPSSTLSLNQEGLYLQQIKLSLSDPDSALSSWSDRDTTPCSWSGIKCDPTTSSITSIDLSNSNVAGPFPSLLCRLQNLTSLSFSINNIN STLPLDISTCQNLQHLDLSQNLLTGTLPHTLADLPNLRYLDLTGNNFSGDIPDTFARFQKLEVISLVYNLMDGIIPPFLGNITTLRMLNLSYNPFTPGRV PPEFGNLTNLETLWLTQCNLNGEIPDSLGRLKKLKDLDLALNNLGGSIPGSLTELTSVVQIELYNNSLTGGLPRGLGKLTELKRLDVSMNRLTGWIPDEL CQLPLESLNLYENGFTGTLPASIADSPSLYELRLFQNRLTGELPQNLGKNAPLRWIDVSNNDLTGQIPASLCENGELEEILMIYNSFSGQIPESLSQCRS LTRVRLGYNRLSGEVPAGLWGLPHVSLFDLFNNSFSGPISKTIASAANLSKLIIDMNNFDGNIPEEIGFLANLSEFSGSENRFNGSLPGSIVNLKELGSL DLHGNALSGDLPDGVNSWKKMNELNLASNAFSGNIPDGIGGMSLLNYLDLSNNRLSGKIPIGLQNLKLNKLNLSNNRLSGGIPPLFAKEMYKSSFVGNPG LCGDIEGLCDGRGGGRGIGYAWSMRSIFALAVFLLIFGVVWFYFKYRNFKKARAVDKSKWTLMSFHNLGFSEYEILDCLDEDNVIGSGSSGKVYKVVLSN GEAVAVKKLWGGQKKQGGDVDVEKGQVIQDNGFDAEVATLSKIRHKNIVKLWCCCTTRDCNLLVYEYMSNGSLGDLLHSSKGGLLDWPTRYKIVADAAEG LSYLHHDCVPPIVHRDVKSNNILLDGDYGARVADFGVAKVFESTGKLKSMSIIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKRPVDPDYGEK DLVNWVCTTLDLKGVDHVIDPRLDSCFKEEICKVLNIGILCTSPLPINRPSMRRVVKMLQEIGADNQSKTAKKDGKLTPYYFEDASDHGSVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.011G058100 [exp]	0	1
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Potri.008G112000 [exp]	2.44	0.5723
AT3G11920			glutaredoxin-related (.1)		Potri.008G144800 [exp]	8.66	0.5651
AT5G52830	WRKY	ATWRKY27, WRKY2...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.004G072000 [exp]	15.87	0.5317
AT4G12340			copper ion binding (.1)		Potri.003G114200 [exp]	21.16	0.5115
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Potri.019G068700 [exp]	22.80	0.5488
AT3G66654			Cyclophilin-like peptidyl-prol...		Potri.010G144500 [exp]	48.24	0.5201
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Potri.010G255600 [exp]	55.62	0.5380
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Potri.002G257800 [exp]	61.18	0.5031
AT4G32760			ENTH/VHS/GAT family protein (....		Potri.006G241000 [exp]	63.87	0.5233
AT3G14440		SIS7, ATNCED3, ...	SALT TOLERANT 1, SUGAR INSENSI...		Potri.001G393800 [exp]	67.86	0.4516	NCED3.1

Compare expression of checked genes

Potri.011G058100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.