Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46080 326 / 4e-111 Protein kinase superfamily protein (.1) AT3G59420 173 / 4e-48 ACR4 crinkly4 (.1) AT3G09780 170 / 3e-47 CCR1, ATCRR1 CRINKLY4 related 1 (.1) AT2G02220 166 / 1e-45 ATPSKR1 phytosulfokin receptor 1 (.1) AT3G13380 166 / 2e-45 BRL3 BRI1-like 3 (.1) AT2G39180 164 / 3e-45 CCR2, ATCRR2 CRINKLY4 related 2 (.1) AT5G07280 165 / 4e-45 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G42440 155 / 5e-44 Protein kinase superfamily protein (.1) AT1G61860 152 / 9e-43 Protein kinase superfamily protein (.1) AT1G55610 157 / 2e-42 BRL1 BRI1 like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G049200 [exp] 558 / 0 AT5G46080 321 / 4e-109 Protein kinase superfamily protein (.1) Potri.010G221200 [exp] 178 / 3e-50 AT2G39180 899 / 0.0 CRINKLY4 related 2 (.1) Potri.008G144700 [exp] 166 / 1e-45 AT2G02220 1258 / 0.0 phytosulfokin receptor 1 (.1) Potri.015G141200 [exp] 166 / 2e-45 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G097700 [exp] 165 / 2e-45 AT2G02220 1187 / 0.0 phytosulfokin receptor 1 (.1) Potri.016G089200 [exp] 164 / 3e-45 AT3G09780 946 / 0.0 CRINKLY4 related 1 (.1) Potri.017G029900 [exp] 164 / 8e-45 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.007G128400 [exp] 162 / 4e-44 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.001G421400 [exp] 155 / 5e-44 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015326 [exp] 297 / 3e-99 AT5G46080 271 / 4e-89 Protein kinase superfamily protein (.1) Lus10025455 [exp] 288 / 1e-95 AT5G46080 276 / 3e-91 Protein kinase superfamily protein (.1) Lus10000764 [exp] 174 / 3e-48 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10036524 [exp] 171 / 2e-47 AT2G39180 848 / 0.0 CRINKLY4 related 2 (.1) Lus10015956 [exp] 171 / 3e-47 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10041404 [exp] 170 / 3e-47 AT2G39180 849 / 0.0 CRINKLY4 related 2 (.1) Lus10015756 [exp] 159 / 8e-45 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10005403 [exp] 158 / 1e-42 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10019897 [exp] 149 / 1e-41 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10014019 [exp] 149 / 7e-41 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.011G058300.1 pacid=42781435 polypeptide=Potri.011G058300.1.p locus=Potri.011G058300 ID=Potri.011G058300.1.v4.1 annot-version=v4.1 ATGAAATCCAGCCAGGAAGTTGCTTATTATTTTATCTTGTCTCTTCTTGCAGCATCTGTTGTCATTCTTTGTTTGGTCCTGACAATCTTTTGTCGAAAGA TCAAACCGATAGAATCTGAAGAAAGTCTTCCAGCCGCCAAGATTTCTGCACAGGGGTATCCATTAACAGATATTGATGATGCTACTGAAGGGTTCAATCG TCGAAGAATTATCGGCACCGGTCGTTTAGGCACTGTGTATGCAGCTGTATTGCCAAGCGATCAAAAGCCGGTTGCTGTCAAGAGAATACACCCTTCTCTT GTTCTGAGTAATGCTGGTTTTGGGTTCACTTCAATACTGAAAACACTCTCTTCGGCTCGGCATCCTAACATAGTGCCTATACTAGGATTCTCTCAGGCTC CTGGTGAGAGAATCATTGTAATGGAATTTGTTAGTGCGGTGAGTCTGGATTATTATTTGCATGAGAATTCTGATGGGGCGTCATCATTATTGGACTGGAG CCGGCGTTTGAGTATCGCAGCCGGGGCGGCTAGAGGACTCGAATACTTGCACGAAGGGATGGCACCAAATATTGTTCATGGATGTTTCAAGGCATCAAAT GTTCTACTAGATGACAAGTTGTGTGCTAGGGTTAGTGATTATGGGCTATCTTCATTGGCACCTTATGAAAAGAGGGGGCTTGCGGGGTATGTGGATGATG AGCATTGGAGGAATGGAAGGGGGGAGGCTTGCAAAGAAGGTGATGTTTATGGGTTTGGTGTGGTTTTGTTGGATCTGTTGAGTGGAAGGAGAGCCGAGGA AGGGTTACTTGTGAGATGGGCATTGCCTTTGATTAAACAAATGAGGTTTAGTGAGCTTTTGGATCTTAGACTTGTAATGCCTTCTGATATGAGGCCACTT ATTAGATTGGCCAAGGTTGCTTCAGCTTGTGTTAGCAATTCCAGGAAGAGTAGGCCTACTATCGTCCAAGTAGCTACTATTTTAAACAACTTGGAGATTG AGGTATGTGCTTGA
AA sequence Show only first row Show all	>Potri.011G058300.1 pacid=42781435 polypeptide=Potri.011G058300.1.p locus=Potri.011G058300 ID=Potri.011G058300.1.v4.1 annot-version=v4.1 MKSSQEVAYYFILSLLAASVVILCLVLTIFCRKIKPIESEESLPAAKISAQGYPLTDIDDATEGFNRRRIIGTGRLGTVYAAVLPSDQKPVAVKRIHPSL VLSNAGFGFTSILKTLSSARHPNIVPILGFSQAPGERIIVMEFVSAVSLDYYLHENSDGASSLLDWSRRLSIAAGAARGLEYLHEGMAPNIVHGCFKASN VLLDDKLCARVSDYGLSSLAPYEKRGLAGYVDDEHWRNGRGEACKEGDVYGFGVVLLDLLSGRRAEEGLLVRWALPLIKQMRFSELLDLRLVMPSDMRPL IRLAKVASACVSNSRKSRPTIVQVATILNNLEIEVCA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46080			Protein kinase superfamily pro...		Potri.011G058300 [exp]	0	1
AT5G48100		LAC15, TT10, AT...	TRANSPARENT TESTA 10, LACCASE-...		Potri.005G200500 [exp]	1.00	0.9763
AT5G41761			unknown protein		Potri.006G017700 [exp]	3.87	0.9521
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033500 [exp]	4.69	0.9562
AT3G19580	C2H2ZnF	AZF2	zinc-finger protein 2 (.1.2)		Potri.009G089400 [exp]	6.63	0.9407
AT3G03270			Adenine nucleotide alpha hydro...		Potri.004G075375 [exp]	7.07	0.9480
AT1G24140			Matrixin family protein (.1)		Potri.012G104600 [exp]	7.48	0.9501	Pt-MMP.14
					Potri.003G152400 [exp]	7.48	0.9322
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033900 [exp]	9.89	0.9469
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.001G451300 [exp]	10.19	0.9450
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Potri.019G031400 [exp]	13.41	0.8885

Compare expression of checked genes

Potri.011G058300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.