Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46070 1352 / 0 Guanylate-binding family protein (.1) AT1G03830 438 / 1e-136 guanylate-binding family protein (.1.2) AT2G38840 133 / 6e-32 Guanylate-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G049400 [exp] 1815 / 0 AT5G46070 1334 / 0.0 Guanylate-binding family protein (.1) Potri.017G016800 [exp] 1044 / 0 AT5G46070 928 / 0.0 Guanylate-binding family protein (.1) Potri.005G168402 [exp] 121 / 7e-33 AT5G46070 116 / 5e-32 Guanylate-binding family protein (.1) Potri.002G046000 [exp] 123 / 6e-29 AT2G38840 1011 / 0.0 Guanylate-binding family protein (.1) Potri.005G217300 [exp] 122 / 1e-28 AT2G38840 960 / 0.0 Guanylate-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015327 [exp] 1572 / 0 AT5G46070 1415 / 0.0 Guanylate-binding family protein (.1) Lus10025456 [exp] 1569 / 0 AT5G46070 1401 / 0.0 Guanylate-binding family protein (.1) Lus10013965 [exp] 1472 / 0 AT5G46070 1390 / 0.0 Guanylate-binding family protein (.1) Lus10015390 [exp] 1470 / 0 AT5G46070 1392 / 0.0 Guanylate-binding family protein (.1) Lus10018638 [exp] 581 / 0 AT5G46070 526 / 2e-169 Guanylate-binding family protein (.1) Lus10018755 [exp] 123 / 1e-28 AT2G38840 989 / 0.0 Guanylate-binding family protein (.1) Lus10014720 [exp] 123 / 1e-28 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10024841 [exp] 120 / 6e-28 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10003085 [exp] 98 / 8e-23 AT2G38840 298 / 8e-99 Guanylate-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF02263 [poplar] [flax] GBP Guanylate-binding protein, N-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF02841 [poplar] [flax] GBP_C Guanylate-binding protein, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.011G058500.2 pacid=42781377 polypeptide=Potri.011G058500.2.p locus=Potri.011G058500 ID=Potri.011G058500.2.v4.1 annot-version=v4.1 ATGTTCGGCTTCTTTAGAGGAAGCGCCGACTCCTCTCCCCAGTCATCCTACTCTCAGTCGTCTTCTTCCTCTATGTCGCCGTCTCCGTCGGCTCCTCCTG TCACCGGACCAGCTAGGCCGATCCGACTTGTTTACTGCGATGAGAAAGGGAAGTTTCGGATGGATCCAGAAGCAGTGGCTACTCTCCAGCTTGTTAAGGA ACCAATCGGTGTCGTTTCAGTCTGTGGTCGCGCTCGACAGGGAAAAAGCTTTATTTTGAATCAGCTTATTGGCAGGAGTAGTGGATTTCAAGTAGCATCC ACTCATCGGCCATGTACAAAAGGACTTTGGTTGTGGAGTGCACCGTTAAAGAGAACTGCCCTTGATGGAACTCAGTACAATCTCTTACTGTTAGACAGTG AAGGAATAGATGCTTATGATCAAACAGGAACATACAGCACTCAGATATTCTCCTTAGCTGTCCTTCTATCTAGTATGTTCATTTACAATCAGATGGGTGG TATAGATGAAGCAGCACTTGATCGACTCTCCCTTGTCACTCAAATGACAAAACATATTCGTGTTAGAGCTTCTGGTGGAAGAAGTTCAGCTTCTGAACTC GGGCAGTTCTCCCCAATTTTTGTTTGGCTTCTAAGGGATTTTTATCTGGATTTAGTTGAGGATAATAGGAGAATAACACCCCGTGACTATCTAGAGCTTG CTCTAAGGTCAGTTCAGGGAAATGGAAAAGATATAGCTGCTAAAAATGAGATTCGGGACTCAATTCGAGCTCTGTTTCCAGACAGAGAATGCTTCCCTCT TGTGCGGCCTTTGAACAATGAAAATGATCTCCAGCATATGGATCAAATTTCGTTGGATAAACTAAGGCCTGAATTTAGAGCTGGGCTGGATGCATTGACA AAATTTGTTTTCGAGAGAACAAGGCCCAAGCAAATTGGCGCCACTGTAATGACAGGCCCAGTCCTTGTTGGTATTACAGAATCTTATCTAGAGGCTCTCA ATAATGGTGCAGTACCAACAATATCTTCCTCATGGCAGAGTGTTGAAGAAGCTGAGTGTAGGCGAGCATATGACGCTGCCACAGAAATTTATATGTCGAG TTTTGACCGTTCGAAGCCAACTGAGGAAGTTGTTTTGAGAGAATCACATGAAGAAGCTGTTAAAAAATCACTGGCTGCATTTAATGCTGCCGCTGTGGGG ATTGGTTCAGCAAGGAAGAAATATGAAGAGCTTCTCCAAAAATTCTCCAGAAGAGCATTTGAGGATTACAAGAGGAATGCATTTATGGAGGCAGACTTGA GATGTTCAAACACTATACAAAACATGGAAAAGAGACTGAGAACAGTCTGTCATGCTTCTGATGCCAATGTTGATAACGTTGTGAAAGTCCTTGATGGTCT TTTATCTGAATATGAAACATCATGTCATGGTCCAGGGAAATGGCAGAAATTAGCGATGTTCCTACAACAAAGTTTGGAAGGTCCAATACTTGACCTTGCA AAACGGCTAAATGATAAAATTGGATCCGAGAAGAGTTCTCTTGTGCTGAGATGTCGCTCAATAGAGGATAAAATGGCGTTACTTCACAAGCAACTAGAAG CTAGTGAGAAAGATAAGTCTGAATATATGAAGCGATATGATGAAGCTATTAATGAAAAGAAGAAGCTTGCTGATGATTATATGAGGCGCATAAATGATTT ACAAAGTAATCGTAGTTCATTGGATGAGAGGTGTTCTAACTTGGTGAAAACATTGGATACTGCCAAGCAAGAAACATCCAACTGGAAAAGAAAACATGAT CAGGTGTTATCAAAGCAGAAAGCTGATGAAGAGCAAGCAGCTTCAGAGATTGCAATTCTCAAGTCTCGGAGCAGCGCTGCTGAAGCAAGGTTGGCTGCTT CTCATGAACAAACCAGGTCAGCTGAAGAAGAGGCAGCAGAGTGGAAACGGAAGTATGACATTGCTGTAAGAGAGACAAAAGCCGCTTTAGAGAAAGCGTC GAATGTGCAAGGAAGAATTAATAAAGAAACACAACTGAGGGAAGATGCACTGCGGGAAGAATTTTCTGGCCGTTTGGTTGTGAAGGAAGATGAAATAAAG GAGAAGAATAGGAAGATAGAGCATGCAGAGCAGTGTTTGACAACCTTAAACATGGAGCTAAAGGCTGCCGAGTCAAAAATGAAGAGTTATGATACTGAAA TATCCTCCCTGAAGCTTGAAATCAAAGAGTTGGCTGAGAGACTGGAGACTGCAAATGCTAAGGCCCAAACTTATGAGAGAGAAGCTAGGATTCTGGAACA AGAGAAGATCCATCTGGAGCAAAGGTACCGATCTGAGTTTGAGAGGTTTGCAGAAGTCCAGGAAAGGTGTAATCATGCTGAAAAAGAATGTAAGAGGGCT ACAGAATTAGCTGATAAAGCTAGGACTGATGCAGTATCTGCACAAAAGGAAAAAAATGAGTTTCAGAAATTGGCAATGGAAAGATTAGCCCAAATTGAGA GGGCTCAGAGGCATACTGAAAGCTTGGATAGACAGAAAAATGATCTGGCTGGTGAACTTGAAAGTGTTCGTGTGTCGGAGATGGATGCTGTCTTGAAAGT TGCATTGCTAGAAGCTAGAGTTGAAGAAAGGGAAAAAGAAATAGAGTCACTTCTGAAATCAAACAATGTGGAGAGGGCTAGTACAGTTAAAGCACTTCAA GATCTTCTGGATGATGAACGGAAAGCCCACAGTGTTGCAAATAAAAGAGCTGAAGACTTCTCTCTTCAGTTGGAAGTAGCACGGGCTAAACTTGATTCCC TTCAACAGGAGTTTACTTCAGTTCGTCTGAATGAGTCAGCATTGGATGGCAAGCTTAAGGCTGCTTCCCATGGAAAACGAATTAGAACAGAAGATGTCGA AATGGGTGTAGGATCTGTTCAAGACACAGGCACAGATGACAGAAGAGTAAAGAAGAGGTCGAGGAGTACAACCAGCCCCGTAATGCTCACACAACCAGAA GATGGTGGTTCAGTGTTCAAGGGCAATGAGGATAATCAAAGTCAGCGATCGGACCAGGAAGATTATAGAAAGTTCACTATCCAGGAACTAAAGCAGGAAC TTACAAAACATAATTATGGAGCTGAGATCCTCAAGTTGCGAAGTCACAACAAGAAAGACATCCTTGCATTATATGAGAAATATGTTCTCCAGAAGTCATG A
AA sequence Show only first row Show all	>Potri.011G058500.2 pacid=42781377 polypeptide=Potri.011G058500.2.p locus=Potri.011G058500 ID=Potri.011G058500.2.v4.1 annot-version=v4.1 MFGFFRGSADSSPQSSYSQSSSSSMSPSPSAPPVTGPARPIRLVYCDEKGKFRMDPEAVATLQLVKEPIGVVSVCGRARQGKSFILNQLIGRSSGFQVAS THRPCTKGLWLWSAPLKRTALDGTQYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDEAALDRLSLVTQMTKHIRVRASGGRSSASEL GQFSPIFVWLLRDFYLDLVEDNRRITPRDYLELALRSVQGNGKDIAAKNEIRDSIRALFPDRECFPLVRPLNNENDLQHMDQISLDKLRPEFRAGLDALT KFVFERTRPKQIGATVMTGPVLVGITESYLEALNNGAVPTISSSWQSVEEAECRRAYDAATEIYMSSFDRSKPTEEVVLRESHEEAVKKSLAAFNAAAVG IGSARKKYEELLQKFSRRAFEDYKRNAFMEADLRCSNTIQNMEKRLRTVCHASDANVDNVVKVLDGLLSEYETSCHGPGKWQKLAMFLQQSLEGPILDLA KRLNDKIGSEKSSLVLRCRSIEDKMALLHKQLEASEKDKSEYMKRYDEAINEKKKLADDYMRRINDLQSNRSSLDERCSNLVKTLDTAKQETSNWKRKHD QVLSKQKADEEQAASEIAILKSRSSAAEARLAASHEQTRSAEEEAAEWKRKYDIAVRETKAALEKASNVQGRINKETQLREDALREEFSGRLVVKEDEIK EKNRKIEHAEQCLTTLNMELKAAESKMKSYDTEISSLKLEIKELAERLETANAKAQTYEREARILEQEKIHLEQRYRSEFERFAEVQERCNHAEKECKRA TELADKARTDAVSAQKEKNEFQKLAMERLAQIERAQRHTESLDRQKNDLAGELESVRVSEMDAVLKVALLEARVEEREKEIESLLKSNNVERASTVKALQ DLLDDERKAHSVANKRAEDFSLQLEVARAKLDSLQQEFTSVRLNESALDGKLKAASHGKRIRTEDVEMGVGSVQDTGTDDRRVKKRSRSTTSPVMLTQPE DGGSVFKGNEDNQSQRSDQEDYRKFTIQELKQELTKHNYGAEILKLRSHNKKDILALYEKYVLQKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46070			Guanylate-binding family prote...		Potri.011G058500 [exp]	0	1
AT2G27210		BSL3	BRI1 suppressor 1 (BSU1)-like ...		Potri.001G215700 [exp]	4.00	0.7921
AT3G06400		CHR11	chromatin-remodeling protein 1...		Potri.010G021400 [exp]	4.47	0.8105
AT3G63400			Cyclophilin-like peptidyl-prol...		Potri.005G215800 [exp]	6.70	0.7621
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Potri.015G089000 [exp]	7.93	0.7969
AT5G46070			Guanylate-binding family prote...		Potri.004G049400 [exp]	12.24	0.7354
AT4G08310			unknown protein		Potri.002G085000 [exp]	17.54	0.6896
AT5G61150		VIP4	VERNALIZATION INDEPENDENCE 4, ...		Potri.012G065600 [exp]	18.65	0.7797
AT2G27210		BSL3	BRI1 suppressor 1 (BSU1)-like ...		Potri.009G016900 [exp]	18.70	0.7577
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Potri.010G177400 [exp]	27.11	0.7219
AT3G51620			PAP/OAS1 substrate-binding dom...		Potri.019G128800 [exp]	28.35	0.6569

Compare expression of checked genes

Potri.011G058500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.