Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33860 156 / 5e-43 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G60450 113 / 1e-27 ARF ARF4 auxin response factor 4 (.1) AT5G62000 108 / 5e-26 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G19220 107 / 1e-25 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT1G19850 102 / 4e-24 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G20730 99 / 1e-22 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT5G37020 98 / 2e-22 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G30330 97 / 5e-22 ARF ARF6 auxin response factor 6 (.1.2) AT4G23980 96 / 1e-21 ARF ARF9 auxin response factor 9 (.1.2) AT1G59750 90 / 8e-20 ARF ARF1 auxin response factor 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G059300 [exp] 426 / 5e-145 AT2G33860 566 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.004G050150 [exp] 376 / 1e-125 AT2G33860 562 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.009G011800 [exp] 130 / 9e-34 AT5G60450 830 / 0.0 auxin response factor 4 (.1) Potri.012G106100 [exp] 107 / 1e-25 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.006G138500 [exp] 105 / 5e-25 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.001G066200 [exp] 104 / 8e-25 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.004G078200 [exp] 103 / 2e-24 AT5G37020 1057 / 0.0 auxin response factor 8 (.1.2) Potri.015G105300 [exp] 103 / 2e-24 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G163600 [exp] 103 / 2e-24 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013942 [exp] 217 / 2e-65 AT2G33860 579 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10005264 [exp] 214 / 5e-64 AT2G33860 580 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10033635 [exp] 109 / 2e-26 AT5G20730 741 / 0.0 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) Lus10017680 [exp] 107 / 2e-26 AT1G19220 550 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10027600 [exp] 102 / 1e-23 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10043200 [exp] 101 / 1e-23 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10022943 [exp] 100 / 3e-23 AT1G19220 546 / 4e-177 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10017641 [exp] 100 / 6e-23 AT1G30330 810 / 0.0 auxin response factor 6 (.1.2) Lus10033597 [exp] 100 / 6e-23 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10033598 [exp] 99 / 7e-23 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G059101.2 pacid=42781657 polypeptide=Potri.011G059101.2.p locus=Potri.011G059101 ID=Potri.011G059101.2.v4.1 annot-version=v4.1 ATGATACATTTTATTGAGAAAAGTTTACCCTTGCTAGATACTGAGCATGTAGGGGTTGTGTACAATTTCTTACCTTGTAGGGCCAGCTCATCAGAGTTCA CAATACCTTTTAATAAATTCTTGAAGAGCCTTGATCAATCCTTCTCTTCTGGAATGAGATTCAAAATGTGTTTTGAAACAGAAGATGCAGCGGAGAGAAG ATACACTGGAATTATAACTGGAGTCAGTGAGCTAGATCCTGCTAGATGGCCTGGTTCAAAATGGAAATGCCTGTTGGTAAGGTGGGATGATAGGGAGGCT AACAGGCTCAGCAGGGTTTCTCCTTGGGAAGTTGAGCCTTCTGGTTCTGGTTCTATTTCCAGCTCCAATAACTTTATGGCACCTGGTTTGAAGAGGAGCA GGTCTGGATTGCCTTCATCAAAGGCAGAATTTCCAATTCCTGGTATGATCTGCTTTCCCTCAGATAAATGCATCACCATTTCCAACTTTTTCCTTGTTCT GCATTCAATGTTACTGACTGGTCTGCATGTTTTTCTAACAGATGGGATCGGAGCACCAGGCTTTAGGGAATCTTCAAGGTCCCAGGAGGTCTTGCAAGGT CAAGAAATTATGAGTTTTAATGCTCTTTATGATGGTGTTGATGGTCAGAATCAGCACCCATCTGAAATAAGGAGTTGTTTTCCTGGTTCCCACAGTTCTG GGATTGCTGCATTAGGAAGTGGTATCAGAGACTCGATTGCCACTTCAAATAATTCCTACAAGGGCATAGGCTTTAACGAATCTTATAGATTACATAAGGT CATTCAAGGTCAAGAAATTTTTCCAAGCTCACCATATGGAAGAATCCCAAATGCTAATGAGGCTCGTGAAAATTGTAGTCTTGGATTCTCTATGGTGCCC AAAGGTCAAGCTCAAGAAATGGATGGTCTACAATGA
AA sequence Show only first row Show all	>Potri.011G059101.2 pacid=42781657 polypeptide=Potri.011G059101.2.p locus=Potri.011G059101 ID=Potri.011G059101.2.v4.1 annot-version=v4.1 MIHFIEKSLPLLDTEHVGVVYNFLPCRASSSEFTIPFNKFLKSLDQSFSSGMRFKMCFETEDAAERRYTGIITGVSELDPARWPGSKWKCLLVRWDDREA NRLSRVSPWEVEPSGSGSISSSNNFMAPGLKRSRSGLPSSKAEFPIPGMICFPSDKCITISNFFLVLHSMLLTGLHVFLTDGIGAPGFRESSRSQEVLQG QEIMSFNALYDGVDGQNQHPSEIRSCFPGSHSSGIAALGSGIRDSIATSNNSYKGIGFNESYRLHKVIQGQEIFPSSPYGRIPNANEARENCSLGFSMVP KGQAQEMDGLQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Potri.011G059101 [exp]	0	1
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Potri.004G159000 [exp]	3.87	0.8820
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Potri.007G012700 [exp]	5.29	0.8805
AT5G54010			UDP-Glycosyltransferase superf...		Potri.017G041900 [exp]	6.00	0.8751
AT1G55790			Domain of unknown function (DU...		Potri.003G101200 [exp]	8.06	0.7909
AT1G17960			Threonyl-tRNA synthetase (.1)		Potri.010G096550 [exp]	8.48	0.8743
					Potri.017G045900 [exp]	10.39	0.7631
					Potri.012G030301 [exp]	10.48	0.8705
AT1G79210			N-terminal nucleophile aminohy...		Potri.012G123100 [exp]	11.66	0.8442
AT1G52630			O-fucosyltransferase family pr...		Potri.001G171500 [exp]	11.83	0.8392
AT3G21710			unknown protein		Potri.002G230300 [exp]	12.80	0.8124

Compare expression of checked genes

Potri.011G059101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.