Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33860 565 / 0 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G60450 431 / 4e-140 ARF ARF4 auxin response factor 4 (.1) AT5G62000 377 / 6e-119 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 356 / 7e-113 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT4G23980 337 / 6e-106 ARF ARF9 auxin response factor 9 (.1.2) AT2G46530 326 / 5e-102 ARF ARF11 auxin response factor 11 (.1.2.3) AT1G19220 337 / 8e-102 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT5G37020 328 / 3e-101 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G19850 328 / 7e-100 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT3G61830 319 / 2e-99 ARF ARF18 auxin response factor 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G050150 [exp] 1168 / 0 AT2G33860 562 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.009G011800 [exp] 460 / 6e-152 AT5G60450 830 / 0.0 auxin response factor 4 (.1) Potri.011G059101 [exp] 424 / 4e-144 AT2G33860 156 / 4e-43 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.012G106100 [exp] 375 / 6e-118 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.015G105300 [exp] 370 / 3e-116 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.001G066200 [exp] 360 / 5e-113 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G142100 [exp] 355 / 5e-112 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.004G228800 [exp] 351 / 4e-111 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.003G163600 [exp] 354 / 5e-111 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013942 [exp] 653 / 0 AT2G33860 579 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10005264 [exp] 645 / 0 AT2G33860 580 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10043200 [exp] 371 / 2e-116 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10032541 [exp] 369 / 1e-115 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10007440 [exp] 349 / 4e-110 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10024455 [exp] 343 / 2e-107 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10023058 [exp] 337 / 2e-105 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10010969 [exp] 333 / 7e-103 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10031354 [exp] 333 / 1e-102 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10007386 [exp] 328 / 9e-101 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.011G059300.3 pacid=42781396 polypeptide=Potri.011G059300.3.p locus=Potri.011G059300 ID=Potri.011G059300.3.v4.1 annot-version=v4.1 ATGGTGGGTATGATAGATCTCAACACTATTGAAGAAGATGAAACTACACCGTCTTGTGGGTCTTTATCTTCTCCATCATCATCCTCTGCTGCTTCTGCTT TGAGTGCTTCTGGCTCTGGTTCTAGTACCTCTTCTGTTTGTTTGGAGCTTTGGCATGCTTGTGCTGGCCCACTAATATCTTTGCCAAAGAGAGGGAGTGT TGTTGTGTATTTCCCTCAAGGCCACTTGGAACAACTCCCTGATTTGCCTCTTGCAGTTTATGATCTCCCTTCTCATGTCTTCTGTCGAGTTGTTGATGTC AAGCTCCATGCCGAGGCAGCAAGTGATGAGGTGTATGCACAGGTCTCCCTGGTTCCTGAGAGTGAGGAAATTGAGCAGAAGTTGAGGGAGGGGATATTTG AGGGGGATGGTGAGGAGGAGGATGGTGAAGCCACTGTGAAGATGACAACACCCCATATGTTCTGTAAGACCCTAACTGCTTCTGACACTAGCACTCATGG AGGCTTTTCAGTCCCTCGTCGAGCTGCTGAGGACTGCTTCCCTCCTCTGGATTATACTCAACAAAGGCCTTCACAAGAGCTTGTGGCAAAGGATCTTCAT GGCTCTGAGTGGAAGTTTCGACATATCTACAGGGGTCAGCCACGGAGGCATTTGCTCACTACTGGATGGAGTGCGTTTGTCAATAAGAAAAAACTTGTCT CTGGGGATGCCGTTCTCTTTCTCAGGGGTGAGGATGGGGAATTGAGACTGGGAGTTCGAAGAGCAGCACAAGTTAAATGTGGCCCTACATTTCCAGCTCA ATGGAATCATCAGCTGAATCAGATCTCTCCTGGGGATGTAGCTAATGCTATTTCTACTAGAAGTTTTTTCCACATTTACTACAATCCAAGGGCCAGCTCA TCAGAGTTCATAATACCTTTTAATAAATTCTTGAAGAGCCTTGATCAATCCTTCTCTTCTGGAATGAGATTCAAAATGCGTTTTGAAACAGAAGATGCAG CAGAGAGAAGATACACTGGAATAATAACTGGAGTCAGTGAGCTAGATCCTGCTAGATGGCCTGGTTCAAAATGGAAATGCCTGTTGGTAAGGTGGGATGA TATGGAGGCTAACAGGCTCAGCAGGGTTTCTCCTTGGGAAGTTGAGCCTTCTGGTTCTGGTTCTTTTTCCAGTTCCAATAACTTTACGGCACCTGGTTTG AAGAGGAGCAGGTCTGGATTGCCTTCATCAAAGGCAGAATTTCCAATTCCTGATGGGATAGGAGCACCAGACTTTAGGGAATCTTCAAGGTCCCAGGAGG TCTTGCAAGGTCAAGAAATTATGAGTTTTAATGCTCTTTATGATGGTGTTGATGGTCAGAACCAGCACCCATCTGAAATAAGGAGTTGTTTTCCTGGTTA CCACAGTTCTGGGATTGCTGCATTAGGAAGTGGTATCAGAGACTCGATTGCCACTTCAAATAACTCCTACAAGGGCATAGGCTTTAACGAATCTTATAGA TTCCATAAGGTCTTCCAAGGTCAAGAAATTTTTCCAAGCTCACCATATGGAAGAATCCCAAATGCTAATGAGGCTCGTGAAAATTGTAGTCTTGGATTCT CTGATGGTGTCCAAAGGTCAAGCTCAAGCTCAAGAAATGGATGGTCTACATTGATGCAGGGCTATAATACTCAAATTCGACCTCCTGCACAAGTATCATC ACCATCTTCGGTGTTAATGTTTCAGCATGCTAGCAATCCAGTTCCAAAGCCATCTTCCAATTTTAATTTCAATGATCATGTGCAGCAGACAGCTACCACC CGAAGTTGGTTTTGTGGTCCTGAAATGCAGGGGGGGGATTTCAAGTTGCCTGCACATTCTGAGCCCAGTGTAAAAAGAGGCGGCCAGTGGAGCAATAGTC CTTTTGGTCTGTCCCATGAGCATCTTCAACATGGTGTTTCACAACCTATTGTAGCTCAATCAGCCTTTAGGGGTAGTCAAGATTTGGTGTCGTGCAAAAG CAGCTGCAGACTCTTTGGTTTCTCATTGACTGAGGATAAATGCCTTGTTAATAAGGAGGACAATATGACCTTAATAACATCTCCATTGAATCCTGGATCC TCCTTTCTGCCTCGCGCAGGAGAGCACTTCCATCCAAAGCCTCCAGCAATAAATAATGCAGTTGGGAGCAGTTGTACCGAAGCAATTCTGCAAACCCGTG CTGAAAATTATCGAATATACTAA
AA sequence Show only first row Show all	>Potri.011G059300.3 pacid=42781396 polypeptide=Potri.011G059300.3.p locus=Potri.011G059300 ID=Potri.011G059300.3.v4.1 annot-version=v4.1 MVGMIDLNTIEEDETTPSCGSLSSPSSSSAASALSASGSGSSTSSVCLELWHACAGPLISLPKRGSVVVYFPQGHLEQLPDLPLAVYDLPSHVFCRVVDV KLHAEAASDEVYAQVSLVPESEEIEQKLREGIFEGDGEEEDGEATVKMTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQQRPSQELVAKDLH GSEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGVRRAAQVKCGPTFPAQWNHQLNQISPGDVANAISTRSFFHIYYNPRASS SEFIIPFNKFLKSLDQSFSSGMRFKMRFETEDAAERRYTGIITGVSELDPARWPGSKWKCLLVRWDDMEANRLSRVSPWEVEPSGSGSFSSSNNFTAPGL KRSRSGLPSSKAEFPIPDGIGAPDFRESSRSQEVLQGQEIMSFNALYDGVDGQNQHPSEIRSCFPGYHSSGIAALGSGIRDSIATSNNSYKGIGFNESYR FHKVFQGQEIFPSSPYGRIPNANEARENCSLGFSDGVQRSSSSSRNGWSTLMQGYNTQIRPPAQVSSPSSVLMFQHASNPVPKPSSNFNFNDHVQQTATT RSWFCGPEMQGGDFKLPAHSEPSVKRGGQWSNSPFGLSHEHLQHGVSQPIVAQSAFRGSQDLVSCKSSCRLFGFSLTEDKCLVNKEDNMTLITSPLNPGS SFLPRAGEHFHPKPPAINNAVGSSCTEAILQTRAENYRIY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Potri.011G059300 [exp]	0	1
AT2G41140		CRK1, ATCRK1, A...	CDPK-related kinase 1 (.1)		Potri.016G035500 [exp]	8.77	0.7987	CRK1.2
AT5G06850			C2 calcium/lipid-binding plant...		Potri.016G049300 [exp]	9.69	0.8204
AT3G60730			Plant invertase/pectin methyle...		Potri.002G145700 [exp]	11.95	0.7930
AT2G44830			Protein kinase superfamily pro...		Potri.002G137700 [exp]	12.48	0.8063
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Potri.004G223900 [exp]	15.74	0.8193
AT1G59580		ATMPK2	mitogen-activated protein kina...		Potri.005G231100 [exp]	20.49	0.7515	Pt-MPK1.3
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Potri.001G073600 [exp]	20.49	0.8032
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.001G383600 [exp]	22.64	0.7707
AT4G40050			Protein of unknown function (D...		Potri.005G072200 [exp]	24.67	0.7166
AT2G28150			Domain of unknown function (DU...		Potri.004G216200 [exp]	26.26	0.7851

Compare expression of checked genes

Potri.011G059300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.