Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46060 152 / 2e-45 Protein of unknown function, DUF599 (.1) AT3G18215 125 / 7e-35 Protein of unknown function, DUF599 (.1) AT5G24600 109 / 4e-29 Protein of unknown function, DUF599 (.1.2) AT5G10580 87 / 2e-20 Protein of unknown function, DUF599 (.1.2) AT4G31330 82 / 2e-18 Protein of unknown function, DUF599 (.1) AT5G24790 71 / 3e-14 Protein of unknown function, DUF599 (.1) AT5G43180 54 / 1e-08 Protein of unknown function, DUF599 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G372900 [exp] 167 / 3e-51 AT5G46060 145 / 6e-43 Protein of unknown function, DUF599 (.1) Potri.015G001300 [exp] 115 / 3e-31 AT5G24600 322 / 4e-112 Protein of unknown function, DUF599 (.1.2) Potri.015G001500 [exp] 113 / 1e-30 AT5G24600 316 / 7e-110 Protein of unknown function, DUF599 (.1.2) Potri.006G278000 [exp] 95 / 2e-23 AT4G31330 371 / 1e-131 Protein of unknown function, DUF599 (.1) Potri.016G137800 [exp] 62 / 3e-11 AT5G43180 174 / 5e-54 Protein of unknown function, DUF599 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005266 [exp] 193 / 1e-61 AT5G46060 207 / 4e-67 Protein of unknown function, DUF599 (.1) Lus10013943 [exp] 190 / 2e-60 AT5G46060 212 / 5e-69 Protein of unknown function, DUF599 (.1) Lus10000133 [exp] 172 / 3e-53 AT5G46060 98 / 9e-25 Protein of unknown function, DUF599 (.1) Lus10005267 [exp] 172 / 3e-53 AT5G46060 98 / 9e-25 Protein of unknown function, DUF599 (.1) Lus10013944 [exp] 166 / 6e-51 AT5G46060 100 / 3e-31 Protein of unknown function, DUF599 (.1) Lus10009010 [exp] 122 / 5e-34 AT3G18215 317 / 2e-110 Protein of unknown function, DUF599 (.1) Lus10015590 [exp] 102 / 6e-26 AT5G24600 291 / 2e-99 Protein of unknown function, DUF599 (.1.2) Lus10032916 [exp] 101 / 2e-25 AT5G24600 292 / 6e-100 Protein of unknown function, DUF599 (.1.2) Lus10013947 [exp] 100 / 7e-25 AT5G24600 272 / 6e-92 Protein of unknown function, DUF599 (.1.2) Lus10005272 [exp] 94 / 2e-22 AT5G24600 267 / 8e-90 Protein of unknown function, DUF599 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04654 [poplar] [flax] DUF599 Protein of unknown function, DUF599
Representative CDS sequence Show only first row Show all	>Potri.011G059400.2 pacid=42781320 polypeptide=Potri.011G059400.2.p locus=Potri.011G059400 ID=Potri.011G059400.2.v4.1 annot-version=v4.1 ATGTTAAGCATAGATTTCCATAAGGAGTACCTTGATTTGGTCTTAGTCCCCTGTGGGCTTCTGATCATGTTTGCCTATCATCTGTTCCTTCTTTACAGAT ACCACAAACATCCTGGCACTACTATCTTTGACCTAGAGAACGAGGACAAGAAACTTTGGGTTCAAAGAGTTCTGCAGGGTGCTGAAAGTGATATTAACAG AGCTGTAAATGTGATTTCGAGCGACACAAACATAGCGACTTTCTTAGCCACCGTCTCTTTGACTCTCAGTTCTCTTATTGGAATTTGGCTTGGAAGTAGT TCTAATAATAATATCCTTGAAAGCAAGAGAATTTATGGTGACACAAGGCCATTCACCATTTTCATCAAGAACGTATGCCTCCTCGTTTCTTTTCTTATTG CTTTTTCATGTTTTGTTCAAGCAGCAAAGAATTTGGTTCATGCAAATTATTTACTGAGCTCCCCAGACAAGAAAAGGGCAGCGAAGAAAATTGAGTTTGC GGTTAAGAAAGGAGGTGAACTTTCCTTTTTCGGGCTCAGAGCTCTTTACTTTGCTCTTAACATGCTCCTTTGGTTTTTCGGCCCAATACCCATGTTTGTT GCCTCTATTGTTATGGTGATAGTCCTGTATTACCATGACATTCATACAGTTTTATTGCATGATCTCTACTGTGAGCTACATTGTCAGAAGGCTAGGGCAC AAGGCGCCAGTGGCAGCTTTAGCTATTGA
AA sequence Show only first row Show all	>Potri.011G059400.2 pacid=42781320 polypeptide=Potri.011G059400.2.p locus=Potri.011G059400 ID=Potri.011G059400.2.v4.1 annot-version=v4.1 MLSIDFHKEYLDLVLVPCGLLIMFAYHLFLLYRYHKHPGTTIFDLENEDKKLWVQRVLQGAESDINRAVNVISSDTNIATFLATVSLTLSSLIGIWLGSS SNNNILESKRIYGDTRPFTIFIKNVCLLVSFLIAFSCFVQAAKNLVHANYLLSSPDKKRAAKKIEFAVKKGGELSFFGLRALYFALNMLLWFFGPIPMFV ASIVMVIVLYYHDIHTVLLHDLYCELHCQKARAQGASGSFSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46060			Protein of unknown function, D...		Potri.011G059400 [exp]	0	1
AT5G02090			unknown protein		Potri.006G090100 [exp]	2.00	0.8057
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Potri.005G026200 [exp]	5.29	0.7660
					Potri.004G112600 [exp]	7.07	0.8589
AT3G15430			Regulator of chromosome conden...		Potri.001G402800 [exp]	7.87	0.7481
AT3G04945		LCR18	low-molecular-weight cysteine-...		Potri.013G032700 [exp]	14.76	0.8092
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.013G150900 [exp]	15.42	0.6984
AT4G15020			hAT transposon superfamily (.1...		Potri.018G145554 [exp]	17.49	0.7738
AT1G30760			FAD-binding Berberine family p...		Potri.012G034700 [exp]	19.79	0.7354
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G054100 [exp]	22.71	0.7249
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037600 [exp]	34.81	0.7060

Compare expression of checked genes

Potri.011G059400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.