Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28510 186 / 5e-61 Optic atrophy 3 protein (OPA3) (.1) AT3G58150 132 / 1e-39 Optic atrophy 3 protein (OPA3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G123000 [exp] 179 / 4e-58 AT1G28510 174 / 3e-56 Optic atrophy 3 protein (OPA3) (.1) Potri.019G092900 [exp] 62 / 4e-13 AT1G28510 47 / 9e-08 Optic atrophy 3 protein (OPA3) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005273 [exp] 212 / 5e-71 AT1G28510 239 / 1e-81 Optic atrophy 3 protein (OPA3) (.1) Lus10013949 [exp] 209 / 1e-69 AT1G28510 238 / 3e-81 Optic atrophy 3 protein (OPA3) (.1) Lus10039862 [exp] 54 / 3e-10 AT3G58150 56 / 3e-11 Optic atrophy 3 protein (OPA3) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07047 [poplar] [flax] OPA3 Optic atrophy 3 protein (OPA3)
Representative CDS sequence Show only first row Show all	>Potri.011G059800.1 pacid=42780787 polypeptide=Potri.011G059800.1.p locus=Potri.011G059800 ID=Potri.011G059800.1.v4.1 annot-version=v4.1 ATGGTGCTGCCATTATTGAAGTTAGGGACATTAGCCTTGAAAACATTGAGTAAACCATTGGCCAGCAGGATCAAACAACAGGCTGCTTTTCACCCCAAGT TTCGTCAGTTCATCGTCAACATTGCTCAGGCTAATCATCGGATTACAACAAGAACGCAAAGAAGAATATATGGTCATGCAACTGATGTTGAGATAAGGCC CTTGAATGAAGAAAAAGCTGTCCAGGCTGCTGTTGATCTTATTGGGGAAGTCTTCGTTTTCACGGTGGCAGGAGCTGCTGTGATTTTTGAGGTGCAGAGA AGTGCTAAATCAGAAGCCAGAAAAGAGGAAAAGCGAAAGCAAGAATTGGAGGCAATGAAGCAAAGAGATGAAGACTTGGCAAGAGAAGTGGAACTTTTAA AGCACAAACTACAAGAAATTGAGCAGCTTGCCAAGGGACGAGGACTTGGTGGTATTTTCCAGCTCAAACATTCAGCTGCAGAAGAAGGAAAAGCAGCAAA ATCATAG
AA sequence Show only first row Show all	>Potri.011G059800.1 pacid=42780787 polypeptide=Potri.011G059800.1.p locus=Potri.011G059800 ID=Potri.011G059800.1.v4.1 annot-version=v4.1 MVLPLLKLGTLALKTLSKPLASRIKQQAAFHPKFRQFIVNIAQANHRITTRTQRRIYGHATDVEIRPLNEEKAVQAAVDLIGEVFVFTVAGAAVIFEVQR SAKSEARKEEKRKQELEAMKQRDEDLAREVELLKHKLQEIEQLAKGRGLGGIFQLKHSAAEEGKAAKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28510			Optic atrophy 3 protein (OPA3)...		Potri.011G059800 [exp]	0	1
AT4G00525			unknown protein		Potri.014G083100 [exp]	1.41	0.7857
AT5G07900			Mitochondrial transcription te...		Potri.004G012900 [exp]	1.73	0.8052
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Potri.008G114300 [exp]	5.74	0.7536
AT3G06600			unknown protein		Potri.008G103600 [exp]	7.41	0.7193
AT3G22510			Pre-rRNA-processing protein TS...		Potri.010G086800 [exp]	9.48	0.7114
					Potri.009G042350 [exp]	9.48	0.6968
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Potri.007G048300 [exp]	14.42	0.7427	Pt-CYCD3.3
AT4G29430		RPS15AE	ribosomal protein S15A E (.1)		Potri.009G071250 [exp]	15.87	0.7034
AT5G09450			Tetratricopeptide repeat (TPR)...		Potri.017G048500 [exp]	16.52	0.7109
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Potri.009G115000 [exp]	16.58	0.6943	Pt-ACT2.1

Compare expression of checked genes

Potri.011G059800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.