Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28520 682 / 0 VOZ ATVOZ1, VOZ1 vascular plant one zinc finger protein (.1.2) AT2G42400 381 / 1e-128 VOZ ATVOZ2, VOZ2 vascular plant one zinc finger protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G050900 [exp] 897 / 0 AT1G28520 689 / 0.0 vascular plant one zinc finger protein (.1.2) Potri.019G092800 [exp] 516 / 0 AT1G28520 501 / 1e-175 vascular plant one zinc finger protein (.1.2) Potri.013G123100 [exp] 497 / 3e-174 AT1G28520 480 / 1e-167 vascular plant one zinc finger protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005274 [exp] 616 / 0 AT1G28520 529 / 0.0 vascular plant one zinc finger protein (.1.2) Lus10013950 [exp] 404 / 2e-140 AT1G28520 371 / 6e-128 vascular plant one zinc finger protein (.1.2) Lus10017700 [exp] 340 / 2e-112 AT1G28520 345 / 7e-115 vascular plant one zinc finger protein (.1.2) Lus10033657 [exp] 338 / 5e-112 AT1G28520 339 / 1e-112 vascular plant one zinc finger protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G060000.3 pacid=42782423 polypeptide=Potri.011G060000.3.p locus=Potri.011G060000 ID=Potri.011G060000.3.v4.1 annot-version=v4.1 ATGGGGAAGGGTTCGAAGATCAATTGTAAGTCAGCATCTCATAAGCTTTTCAAGGACAAGGCGAAGAACCGTGTTGATGATCTTCAAGGGATGTTCTTGG ATCTGCAGTTTGCAAGGAAAGAAAGCCGCACGGTTGATGTGGCTGTCCTTGAGGAGCAAGTTCATCAGATGCTTCGTGAATGGAAAGCTGAGCTCAATGA GCCTTCTCCAGCATCTTCTTTGCAACAAGGTGGTAGTCTTGGGTCATTCTCAACGGACATATGCAGGCTGCTGCAGCTTTGCGAGGAGGAAGATGATGCC ACTAGTGCATTAGCAGCACCAAAACCGGAACCTAATGATCAGAGCTTGCAAGTTGGAAACAATGTCGACTTTCAAGAGGGATATGGTGTGAATCATGATC AGCAAGAGCATGTCTTCCCATTTGTTGATCAATGCAAAGACTCCCCTTCAGGAGTTCGTAGCATGGTGATTAATAACATGGAAGGGGTTGCTCAGTTGGA ATACCATCATTTTGATTTACCTCAGAATTCTGAGCAAAACTTTTACACTGGTTTTAATGACATGGATTTGGGTGAGGATGCTACCCATCTTGTTTCCAGC TATCTACCAAGCATGTGTCCTCCGCCTTCAGCTTTCTTAGGCCCAAAATGTGCCCTTTGGGATTGTCCAAGGCCTGCTCAAGGAGGGTTGGACTGGTATC AGGACTATTGTAGCAGCTTTCATCATGCCGTAGCATTGAATGAAGGGCCACCTGGACTGAGTCCGATTCTGAGACCTGGAGGAATTGGTCTGAAAGACGG TCTTCTATTTTCTTCCCTTAGTGCAAAGGTTGAAGGAAAAGATGTTGGAATCCCAGAATGTGAGGGAGCTGCAACTGCGAAGTCCCCATGGAATGCACCT GAGCTATTTGATCTTTCGGTTCTCAAGGGTGAAACAATTAGGGAATGGCTCTTTTTTGATAAGCCTCGCAGAGCATTTGAAAGTGGGAACAGAAAGCAAA GGTCATTGCCTGATTACACTGGGCGTGGTTGGCATGAGTCAAGGAAACAAGTTATGAATGAATTTGGAGGGTTAAAGAGATCATATTACATGGATCCACA ACCACTGAACAATTTTGAGTGGCATCTTTATGAATATGAAATCAATAACTGTGATGCTTGTGCATTATATAGATTGGAACTGAAGGCTGTTGATGGAAAG AAGAGTGCTAAGGGGAAACTAGCAAATGAATCAGTTGTTGATCTGCAGAAGCAGATGGGGAGACTCACTGCTGAATTTCCCTCTGACCACAAGCGTGCTG TCAAAGGACGGACCAAAGTGAATGCTAAGGCTGGTGTCAGAAATGTTTATTCAGGCGCAACCCAGGCGGCACCAACCAATGAAGCATATGACTATGGGCC AGGTCCGCATTATGATTATCTCGTTGAGAATCTAGGAGACTACTATCTGACACAGTTTAAGAAACCATGA
AA sequence Show only first row Show all	>Potri.011G060000.3 pacid=42782423 polypeptide=Potri.011G060000.3.p locus=Potri.011G060000 ID=Potri.011G060000.3.v4.1 annot-version=v4.1 MGKGSKINCKSASHKLFKDKAKNRVDDLQGMFLDLQFARKESRTVDVAVLEEQVHQMLREWKAELNEPSPASSLQQGGSLGSFSTDICRLLQLCEEEDDA TSALAAPKPEPNDQSLQVGNNVDFQEGYGVNHDQQEHVFPFVDQCKDSPSGVRSMVINNMEGVAQLEYHHFDLPQNSEQNFYTGFNDMDLGEDATHLVSS YLPSMCPPPSAFLGPKCALWDCPRPAQGGLDWYQDYCSSFHHAVALNEGPPGLSPILRPGGIGLKDGLLFSSLSAKVEGKDVGIPECEGAATAKSPWNAP ELFDLSVLKGETIREWLFFDKPRRAFESGNRKQRSLPDYTGRGWHESRKQVMNEFGGLKRSYYMDPQPLNNFEWHLYEYEINNCDACALYRLELKAVDGK KSAKGKLANESVVDLQKQMGRLTAEFPSDHKRAVKGRTKVNAKAGVRNVYSGATQAAPTNEAYDYGPGPHYDYLVENLGDYYLTQFKKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Potri.011G060000 [exp]	0	1
AT1G59970			Matrixin family protein (.1)		Potri.008G027900 [exp]	2.00	0.8698
AT1G16000			unknown protein		Potri.004G051201 [exp]	16.73	0.8498
AT4G14270			unknown protein		Potri.008G074600 [exp]	23.91	0.8262
AT1G08530			unknown protein		Potri.019G030400 [exp]	30.62	0.8371
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.012G120160 [exp]	33.04	0.8644
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.019G014378 [exp]	35.84	0.8630
AT1G26540			Agenet domain-containing prote...		Potri.002G192300 [exp]	37.34	0.8213
AT4G14840			unknown protein		Potri.008G153800 [exp]	39.16	0.7988
AT1G16310			Cation efflux family protein (...		Potri.010G172600 [exp]	51.86	0.7730
					Potri.010G132101 [exp]	54.89	0.8260

Compare expression of checked genes

Potri.011G060000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.