Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33880 273 / 4e-89 HD WOX9A, STIP, WOX9, HB-3 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) AT5G45980 171 / 5e-50 HD WOX9B, STPL, WOX8 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) AT3G03660 94 / 8e-22 HD WOX11 WUSCHEL related homeobox 11 (.1.2) AT5G17810 94 / 1e-21 HD WOX12 WUSCHEL related homeobox 12 (.1.2) AT5G05770 76 / 1e-16 HD WOX5A, WOX7 WUSCHEL related homeobox 5A, WUSCHEL related homeobox 7 (.1) AT3G18010 78 / 9e-16 HD WOX1 WUSCHEL related homeobox 1 (.1) AT3G11260 74 / 3e-15 HD WOX5B, WOX5 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) AT2G28610 74 / 1e-14 HD PRS1, PRS, WOX3 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) AT1G20700 72 / 2e-14 HD ATWOX14, WOX14 WUSCHEL related homeobox 14 (.1) AT2G17950 71 / 1e-13 HD WUS1, PGA6, WUS WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G051600 [exp] 547 / 0 AT2G33880 200 / 1e-60 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) Potri.013G066900 [exp] 97 / 5e-23 AT3G03660 233 / 9e-77 WUSCHEL related homeobox 11 (.1.2) Potri.019G040800 [exp] 96 / 2e-22 AT3G03660 221 / 1e-71 WUSCHEL related homeobox 11 (.1.2) Potri.012G047700 [exp] 78 / 1e-15 AT3G18010 174 / 8e-51 WUSCHEL related homeobox 1 (.1) Potri.015G039100 [exp] 77 / 2e-15 AT3G18010 195 / 3e-59 WUSCHEL related homeobox 1 (.1) Potri.010G192100 [exp] 74 / 2e-15 AT3G11260 159 / 1e-49 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Potri.008G065400 [exp] 72 / 2e-14 AT3G11260 176 / 9e-57 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Potri.002G124100 [exp] 71 / 4e-14 AT1G46480 221 / 1e-72 WUSCHEL related homeobox 4 (.1) Potri.014G025300 [exp] 71 / 5e-14 AT1G46480 226 / 5e-75 WUSCHEL related homeobox 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005282 [exp] 310 / 2e-103 AT5G45980 184 / 2e-54 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) Lus10013960 [exp] 239 / 3e-76 AT5G45980 179 / 6e-53 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) Lus10028271 [exp] 79 / 1e-16 AT3G11260 177 / 4e-56 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10042007 [exp] 79 / 6e-16 AT3G18010 174 / 2e-50 WUSCHEL related homeobox 1 (.1) Lus10018011 [exp] 79 / 6e-16 AT3G18010 164 / 9e-47 WUSCHEL related homeobox 1 (.1) Lus10040219 [exp] 77 / 7e-16 AT3G11260 179 / 4e-57 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10023561 [exp] 74 / 6e-15 AT4G35550 201 / 3e-64 WUSCHEL related homeobox 13 (.1) Lus10040447 [exp] 73 / 2e-14 AT4G35550 203 / 4e-65 WUSCHEL related homeobox 13 (.1) Lus10024808 [exp] 72 / 4e-14 AT1G46480 195 / 7e-62 WUSCHEL related homeobox 4 (.1) Lus10041909 [exp] 71 / 3e-13 AT2G17950 145 / 4e-41 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Potri.011G061400.1 pacid=42780694 polypeptide=Potri.011G061400.1.p locus=Potri.011G061400 ID=Potri.011G061400.1.v4.1 annot-version=v4.1 ATGGCTTCATCAAACAGACACTGGCCTAGTTTGTTTAAGTCGAAACCTTGCAACCCTCACCACCACCAATGGCAGCATGACATCAACCCTTCATCTCTCA TGTCAACTGGTTGCCACAGAAACCCCTACGCATCAGTTCCTGGATGTGAAGAGAGAAGTCCAGAGCCAAAGCCGAGATGGAACCCAAAACCTGAGCAGAT TCGCATTTTGGAAGCAATCTTCAATTCTGGGATGGTTAATCCACCAAGGGATGAGATACGGAAGATCAGAGCTCAGTTACAAGAGTATGGCCAAGTTGGT GATGCCAACGTCTTTTACTGGTTTCAAAACAGAAAATCAAGAAGCAAACACAAGCTGAGAAATCTTCAAAACTCAAAACAACAAATTACCCCTTCAACCA CCAAACCTGTGACTGCCTCTCTCACAGCTCCATCGTCTCTATCATCTTCCTCAGAAAAATCCTCTCCAAAAGTGTCCAAAAGGACTCTCTCTTTGAGCTC TCCCCCTTTTATTGATGCTTCCAATTCGCCAAACAGTTCAGTTAGCCAGACCTATTTTCAAGCACAAAATGAATTTGTGTCTGAACCCTTTTTCTTCCCC GTTCAACAGACTGGAGGGGAAACTGTGGCTTTTACTCAAGGGTTTTGCTTCTCTGAGCTCTCAAATGTGGTTCATGTTCAAGATCACACAGTTGGGCCTT GCCCTAGTCTCTTGCTTAGTGAGATAACGAATTCCAGTGCTTCAAAAAAAGCAAACCATGAAGAGAGAAACCTAAAGATGCAACCGCAGCTCAGTTACAC TGCCACCTCCCCAGTTACTCATAGCATCGATCTTGCTCCTCCTCTCCCTCTTTCAGCTAACACTAGCACTGTTTCCATTCAATCCACCATTAGTCAAATT CAAGGTCTAGGGGTGTCCGGTGGCAATGAAAGGTCGACGGTGTTTATCAATGATGTTGCATTTGAAGTAGCTATGGGACCCTTTAATGTGAGAGAGGCTT TTGGTGATGATATTCTGTTGATTCACTCCTCTGGTCAGCCTGTTCTCACAAACGAGTGGGGTATCACCCTGGACTCACTCCAGCATGGCGCTCTCTACTA TTTGGTACCCCTTTCCATTAGTGAACATATATAG
AA sequence Show only first row Show all	>Potri.011G061400.1 pacid=42780694 polypeptide=Potri.011G061400.1.p locus=Potri.011G061400 ID=Potri.011G061400.1.v4.1 annot-version=v4.1 MASSNRHWPSLFKSKPCNPHHHQWQHDINPSSLMSTGCHRNPYASVPGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVG DANVFYWFQNRKSRSKHKLRNLQNSKQQITPSTTKPVTASLTAPSSLSSSSEKSSPKVSKRTLSLSSPPFIDASNSPNSSVSQTYFQAQNEFVSEPFFFP VQQTGGETVAFTQGFCFSELSNVVHVQDHTVGPCPSLLLSEITNSSASKKANHEERNLKMQPQLSYTATSPVTHSIDLAPPLPLSANTSTVSIQSTISQI QGLGVSGGNERSTVFINDVAFEVAMGPFNVREAFGDDILLIHSSGQPVLTNEWGITLDSLQHGALYYLVPLSISEHI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33880	HD	WOX9A, STIP, WO...	WUSCHEL related homeobox 9A, W...		Potri.011G061400 [exp]	0	1
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Potri.019G079150 [exp]	26.72	0.8229
AT5G34883			Protein of unknown function (D...		Potri.017G039175 [exp]	70.42	0.7860
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Potri.003G169600 [exp]	103.24	0.7990
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.003G057250 [exp]	149.99	0.7675
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G009300 [exp]	164.12	0.7828
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.015G133700 [exp]	164.67	0.7724
AT2G04039			unknown protein		Potri.002G217400 [exp]	202.51	0.7553
AT2G26490			Transducin/WD40 repeat-like su...		Potri.003G051100 [exp]	208.99	0.7565

Compare expression of checked genes

Potri.011G061400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.