Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ARAC2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45970 344 / 2e-122 ATRAC2, ATROP7, ARAC2 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) AT1G75840 338 / 3e-120 ATROP4, ATGP3, AT1G75840.1, ARAC5 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) AT1G20090 337 / 1e-119 ROP2, ARAC4, ATROP2, ATRAC4 Arabidopsis RAC-like 4, RHO-related protein from plants 2 (.1) AT2G17800 331 / 2e-117 ARAC1, ATGP2, ATRAC1, ROP3, AtROP3 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) AT3G51300 330 / 4e-117 ATRAC11, ROP1, ARAC11, ROP1AT, AtROP1 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) AT4G35020 330 / 1e-116 ROP6, ARAC3, RHO1PS, ATROP6 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) AT4G35950 328 / 3e-116 ATRAC6, ATROP5, ARAC6, RAC2, AtROP7 RAC-like 2, RHO-RELATED PROTEIN FROM PLANTS 5, RAC-like 6 (.1) AT5G62880 318 / 1e-111 ARAC10, ATRAC10, AtROP11 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1) AT3G48040 315 / 5e-111 ROP10, ARAC8, ATROP10, ATRAC8 Arabidopsis RAC-like 8, RHO-related protein from plants 10 (.1) AT4G28950 304 / 2e-106 ATRAC7, ARAC7, ATROP9, ROP9 Arabidopsis RAC-like 7, RHO-related protein from plants 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G123800 [exp] 349 / 2e-124 AT1G75840 342 / 1e-121 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.019G092300 [exp] 342 / 1e-121 AT1G75840 337 / 9e-120 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.002G019500 [exp] 342 / 1e-121 AT1G75840 352 / 1e-125 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.009G134600 [exp] 339 / 1e-120 AT1G75840 353 / 5e-126 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.005G242000 [exp] 338 / 3e-120 AT1G75840 359 / 2e-128 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.004G174900 [exp] 337 / 9e-120 AT4G35020 360 / 8e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Potri.005G110700 [exp] 332 / 9e-118 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Potri.007G061500 [exp] 332 / 9e-118 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Potri.015G073000 [exp] 319 / 2e-112 AT5G62880 354 / 7e-126 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015298 [exp] 361 / 5e-129 AT5G45970 347 / 9e-124 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) Lus10033131 [exp] 336 / 4e-119 AT4G35020 361 / 4e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10034538 [exp] 334 / 2e-118 AT4G35020 359 / 2e-128 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10014123 [exp] 331 / 4e-117 AT4G35020 354 / 5e-126 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10019786 [exp] 330 / 2e-116 AT4G35020 355 / 1e-126 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10039899 [exp] 325 / 1e-114 AT4G35020 324 / 1e-114 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10014258 [exp] 325 / 2e-114 AT3G51300 394 / 1e-141 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) Lus10025431 [exp] 324 / 3e-114 AT5G45970 319 / 3e-112 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) Lus10002181 [exp] 318 / 5e-112 AT4G35020 320 / 8e-113 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10025959 [exp] 318 / 7e-112 AT2G17800 355 / 2e-126 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF08477 [poplar] [flax] Roc Ras of Complex, Roc, domain of DAPkinase
Representative CDS sequence Show only first row Show all	>Potri.011G061500.1 pacid=42780499 polypeptide=Potri.011G061500.1.p locus=Potri.011G061500 ID=Potri.011G061500.1.v4.1 annot-version=v4.1 ATGAGTACAGCAAGATTTATCAAGTGTGTGACTGTGGGAGATGGGGCTGTAGGAAAGACATGCATGCTCATTTCCTATACTAGCAACACCTTTCCAACGG ACTACGTTCCTACAGTGTTTGACAACTTCAGTGCTAATGTGGTGGTAGATGGTAGTACAGTGAATATTGGATTGTGGGATACTGCAGGGCAAGAAGACTA TAACAGGCTAAGGCCACTGAGTTACAGAGGAGCTGATGTGTTTTTACTGGCCTTCTCTCTCATTAGCAAGGCCAGTTATGAGAACATCTATAAAAAGTGG ATACCTGAGCTAAGGCATTATGCTCCAAATGTGCCAATTGTGCTTGTAGGAACCAAGCTTGATTTGCGAGAAGACAAGCAATACTTAATTGATCATCCTG GAGCAACAACAATAACAACAGCTCAGGGTGAAGAATTGAAGAAAATGATCGGTGCTGTAATTTACATAGAATGCAGTTCCAAAACACAACAGAATGTGAA GACTGTGTTTGATGCTGCAATAAAGGTTGCTTTGCGGCCACCAAAACCAAAAAAGAAACCCCGCAAGCAAAGAACATGTGCTTTCCTCTAG
AA sequence Show only first row Show all	>Potri.011G061500.1 pacid=42780499 polypeptide=Potri.011G061500.1.p locus=Potri.011G061500 ID=Potri.011G061500.1.v4.1 annot-version=v4.1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNIGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIYKKW IPELRHYAPNVPIVLVGTKLDLREDKQYLIDHPGATTITTAQGEELKKMIGAVIYIECSSKTQQNVKTVFDAAIKVALRPPKPKKKPRKQRTCAFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Potri.011G061500 [exp]	0	1	ARAC2.1
AT1G71070			Core-2/I-branching beta-1,6-N-...		Potri.008G006500 [exp]	1.41	0.9449
AT2G14045			unknown protein		Potri.019G014100 [exp]	3.87	0.9276
AT1G56720			Protein kinase superfamily pro...		Potri.013G003700 [exp]	4.89	0.9371
AT5G13560			unknown protein		Potri.010G212900 [exp]	4.89	0.9181
AT1G79420			Protein of unknown function (D...		Potri.010G174200 [exp]	5.65	0.9231
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Potri.005G164200 [exp]	6.32	0.9206
AT3G61790			Protein with RING/U-box and TR...		Potri.014G099200 [exp]	6.92	0.9102
AT3G15220			Protein kinase superfamily pro...		Potri.011G116300 [exp]	8.77	0.9197
AT2G17530			Protein kinase superfamily pro...		Potri.005G102100 [exp]	8.83	0.9203
AT5G54110		ATMAMI	membrane-associated mannitol-i...		Potri.011G126200 [exp]	9.16	0.8766	ATMAMI.1

Compare expression of checked genes

Potri.011G061500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.