Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45960 440 / 9e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G06990 315 / 1e-105 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58430 286 / 2e-94 RXF26 GDSL-like Lipase/Acylhydrolase family protein (.1) AT3G16370 283 / 2e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G30310 283 / 5e-93 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G31540 280 / 6e-92 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G24560 279 / 1e-91 GDSL-like Lipase/Acylhydrolase family protein (.1) AT4G26790 278 / 3e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G20120 273 / 5e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G30220 269 / 1e-87 GDSL-like Lipase/Acylhydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G061900 [exp] 636 / 0 AT5G45960 405 / 4e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 289 / 1e-95 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 288 / 3e-95 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 288 / 1e-94 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 285 / 3e-94 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.002G219700 [exp] 285 / 1e-93 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 272 / 4e-89 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 271 / 5e-88 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G076600 [exp] 268 / 1e-87 AT1G06990 353 / 4e-121 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005280 [exp] 408 / 1e-141 AT5G45960 371 / 4e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013957 [exp] 366 / 7e-127 AT5G45960 331 / 4e-113 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026406 [exp] 286 / 1e-93 AT1G06990 350 / 4e-119 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029958 [exp] 282 / 7e-93 AT2G42990 448 / 1e-158 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006856 [exp] 276 / 2e-90 AT3G16370 507 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037598 [exp] 276 / 2e-90 AT3G16370 502 / 6e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028423 [exp] 260 / 2e-84 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 260 / 3e-84 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013956 [exp] 260 / 5e-84 AT5G45950 432 / 6e-152 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 258 / 2e-83 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.011G062000.1 pacid=42781699 polypeptide=Potri.011G062000.1.p locus=Potri.011G062000 ID=Potri.011G062000.1.v4.1 annot-version=v4.1 ATGGAGAAGGCTTGTTCTAAACAGTATCTCCTTCAACATCTTCTTCGTCTCCTTTTCTATCTGTTAATCTTCATTCCTAATACTTCCAAGGCCCTTGCAA ATCCAAGAGCTTCCAATAATTCAGCTCCGGCAGTCATAGTGTTTGGAGACTCGACTGTCGATCCTGGGAATAACAACTACGTGAAAACAGTTTTTAAGGC TAATTTTGCACCCTATGGAAAGGATTTTGCAAACCACGTCCCAACGGGAAGGTTCAGTAATGGGCGGCTAACCCCTGATTTTATCGCTTCATATATCGGT ATCAAAGAGTCTATACCTCCGTATTTAGACCCTACTCTTAGCATCAAGGAGCTTATGACTGGAGTTAGTTTTGCTTCGGCTGGCTCCGGATTTGATCCTC TTACACCAAGAGTGTCCAATGTGATCGGCATACCAAAGCAACTGGAGTACTTTAAAGAGTATAAAAGAAGACTGGAGTCTGCAATTGGAACGAAAAAGAC CGAAAATCATATCAACAAGGCATTGTTTATCGTCAGTGCTGGCACGAATGACTTCGTTATCAATTATTTTACTCTGCCAATCCGACGAAAAACCTACTCC GTCTCAGGTTACCAGCAATTCATCCTGCAAACAGCCACACAATTCCTTCAGGACTTGTTTGAGCAAGGAGCAAGAAGAATCTTATTTACTGCACTACCTC CAATGGGTTGCCTGCCGGTCGTTATCACCCTTTTCTCGAACCATGCCATCTCAGAACGTGGTTGTCTTGATTATTTTTCCTCCGTCGGACGACAGTTCAA TCAGTTGCTCCAGAATGAGTTAAATCGCATGCAAATTCGATTAGCAAATCAAGGTGTTAGGATATATTTAACTGATGCGTACAGTGCTTTGACCGGCATG ATTCAAGGGCAAGGAAGGTCTGCATTTGATGAAGTAAGCCGTGGCTGCTGTGGAACCGGTTACTTGGAAGCATCTCTCTTGTGCAACCCAAAATCATTTG TGTGTCCTGATGCATCAAAGTACGTATTTTGGGATTCAATACATCCAACTGAGCAGGCATACAACAATGTTTTTAAGTCCATTCGTCCTATAATTGATGC TATCATCAGGGGCTAA
AA sequence Show only first row Show all	>Potri.011G062000.1 pacid=42781699 polypeptide=Potri.011G062000.1.p locus=Potri.011G062000 ID=Potri.011G062000.1.v4.1 annot-version=v4.1 MEKACSKQYLLQHLLRLLFYLLIFIPNTSKALANPRASNNSAPAVIVFGDSTVDPGNNNYVKTVFKANFAPYGKDFANHVPTGRFSNGRLTPDFIASYIG IKESIPPYLDPTLSIKELMTGVSFASAGSGFDPLTPRVSNVIGIPKQLEYFKEYKRRLESAIGTKKTENHINKALFIVSAGTNDFVINYFTLPIRRKTYS VSGYQQFILQTATQFLQDLFEQGARRILFTALPPMGCLPVVITLFSNHAISERGCLDYFSSVGRQFNQLLQNELNRMQIRLANQGVRIYLTDAYSALTGM IQGQGRSAFDEVSRGCCGTGYLEASLLCNPKSFVCPDASKYVFWDSIHPTEQAYNNVFKSIRPIIDAIIRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45960			GDSL-like Lipase/Acylhydrolase...		Potri.011G062000 [exp]	0	1
AT5G49100			unknown protein		Potri.010G012000 [exp]	2.23	0.9639
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Potri.006G183200 [exp]	4.89	0.9428	BRS1.2
					Potri.001G049501 [exp]	5.65	0.9550
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Potri.011G115400 [exp]	6.00	0.9306
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.001G448100 [exp]	6.32	0.9447
AT1G19670		CORI1, ATHCOR1,...	CORONATINE-INDUCED PROTEIN 1, ...		Potri.005G214100 [exp]	7.87	0.9232
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.001G369700 [exp]	8.48	0.9395
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Potri.008G148200 [exp]	8.77	0.9397	ATHB13.2
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Potri.016G143833 [exp]	8.94	0.9460
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Potri.012G117500 [exp]	10.95	0.9413

Compare expression of checked genes

Potri.011G062000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.