Plant FIBer expression Database

Potri.011G062200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G18460 277 / 1e-96 D-Tyr-tRNA(Tyr) deacylase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005278
[exp]
298 / 5e-99 AT2G34060 441 / 3e-152 Peroxidase superfamily protein (.1)
Lus10013955
[exp]
158 / 2e-46 AT2G34060 451 / 1e-158 Peroxidase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02580 Tyr_Deacylase D-Tyr-tRNA(Tyr) deacylase
Representative CDS sequence
>Potri.011G062200.1 pacid=42782206 polypeptide=Potri.011G062200.1.p locus=Potri.011G062200 ID=Potri.011G062200.1.v4.1 annot-version=v4.1
ATGCACTGCCTCCACCACTCGCTCTCTACTCTTCCATCCTTCGCCAAGTCCGCCGACAAAACTGCAAAGAAGTCCACCTTTGCCAGTTGCAAAACTCTCC
AAATCAGAGCCATGAGAGCCGTAGTCCAGCGAGTCACCTCTGCCAGTGTGGAGGTTGATGGCCACATGGTATCGGAGATTGGACCAGGCCTTCTTGTTCT
TGTTGGGCTCCACGAGTCTGATACTGACTCCAATGCTGATTACATATGCCGTAAGGTGTTGAACATGAGGTTGTTTACAAACGGGAGTACTGGCAGAGGA
TGGGACCAGAATGTTATGCAGAGAAATTACGAAGTTCTGTTAGTGAGCCAGTTTACATTGTATGGAGTGTTGAAGGGAAACAAGCCGGATTTTCATGTAG
CAATGCCACCCCAGAAGGCAAAACCTTTCTATGAATCTTTGGTTGATAAATTTCGGAAAGCTTACAGACCGGATGCAATAAAAGATGGTGTGTTCGGAGC
AATGATGAAGGTTAATATAGTGAATGATGGACCGGTCACAATGCAACTGGACTCTTCACAATCATCCAAGAGCACTAATGAGGAAACAGGAAAAACCATT
AATTGA
AA sequence
>Potri.011G062200.1 pacid=42782206 polypeptide=Potri.011G062200.1.p locus=Potri.011G062200 ID=Potri.011G062200.1.v4.1 annot-version=v4.1
MHCLHHSLSTLPSFAKSADKTAKKSTFASCKTLQIRAMRAVVQRVTSASVEVDGHMVSEIGPGLLVLVGLHESDTDSNADYICRKVLNMRLFTNGSTGRG
WDQNVMQRNYEVLLVSQFTLYGVLKGNKPDFHVAMPPQKAKPFYESLVDKFRKAYRPDAIKDGVFGAMMKVNIVNDGPVTMQLDSSQSSKSTNEETGKTI
N

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G18460 D-Tyr-tRNA(Tyr) deacylase fami... Potri.011G062200
[exp]
0 1
AT1G15390 PDF1A, ATDEF1 peptide deformylase 1A (.1) Potri.001G171800
[exp]
1.00 0.8467 PDF1.2
AT3G16230 Predicted eukaryotic LigT (.1.... Potri.001G186600
[exp]
2.44 0.8028
AT1G08110 lactoylglutathione lyase famil... Potri.009G007200
[exp]
6.92 0.7220
AT5G40500 unknown protein Potri.001G344700
[exp]
8.12 0.6988
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.007G109400
[exp]
9.21 0.7046
AT1G44790 ChaC-like family protein (.1) Potri.005G176300
[exp]
10.19 0.7063
AT1G77490 TAPX thylakoidal ascorbate peroxida... Potri.005G179200
[exp]
12.84 0.7075
AT2G32230 PRORP1 proteinaceous RNase P 1 (.1) Potri.004G074100
[exp]
14.38 0.7119
AT1G31190 IMPL1 myo-inositol monophosphatase l... Potri.015G120400
[exp]
15.00 0.6978
AT5G37360 unknown protein Potri.013G050300
[exp]
18.00 0.7683

Potri.011G062200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.