Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34060 434 / 1e-152 Peroxidase superfamily protein (.1) AT5G14130 276 / 1e-90 Peroxidase superfamily protein (.1) AT4G17690 255 / 1e-82 Peroxidase superfamily protein (.1) AT4G37530 254 / 5e-82 Peroxidase superfamily protein (.1.2) AT5G47000 251 / 9e-81 Peroxidase superfamily protein (.1) AT5G67400 247 / 3e-79 RHS19 root hair specific 19 (.1) AT1G24110 246 / 7e-79 Peroxidase superfamily protein (.1) AT2G18980 244 / 4e-78 Peroxidase superfamily protein (.1) AT4G37520 242 / 2e-77 Peroxidase superfamily protein (.1.2) AT3G49960 241 / 7e-77 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G052100 [exp] 573 / 0 AT2G34060 458 / 1e-162 Peroxidase superfamily protein (.1) Potri.007G074700 [exp] 302 / 6e-101 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.010G036100 [exp] 262 / 2e-85 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1) Potri.012G076500 [exp] 259 / 3e-84 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.007G053400 [exp] 256 / 9e-83 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.017G064100 [exp] 252 / 2e-81 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.001G329200 [exp] 251 / 4e-81 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.001G351000 [exp] 247 / 2e-79 AT3G28200 448 / 2e-159 Peroxidase superfamily protein (.1) Potri.018G089900 [exp] 245 / 1e-78 AT4G30170 472 / 6e-169 Peroxidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013955 [exp] 457 / 2e-160 AT2G34060 451 / 1e-158 Peroxidase superfamily protein (.1) Lus10005278 [exp] 456 / 7e-158 AT2G34060 441 / 3e-152 Peroxidase superfamily protein (.1) Lus10010716 [exp] 266 / 8e-87 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10012540 [exp] 260 / 4e-84 AT5G14130 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10042144 [exp] 257 / 5e-83 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1) Lus10004234 [exp] 256 / 1e-82 AT1G24110 391 / 1e-136 Peroxidase superfamily protein (.1) Lus10011079 [exp] 248 / 2e-79 AT4G37530 479 / 2e-171 Peroxidase superfamily protein (.1.2) Lus10001442 [exp] 244 / 6e-78 AT4G30170 475 / 7e-170 Peroxidase family protein (.1) Lus10039445 [exp] 242 / 3e-77 AT5G40150 467 / 8e-167 Peroxidase superfamily protein (.1) Lus10031664 [exp] 239 / 2e-76 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.011G062300.1 pacid=42781517 polypeptide=Potri.011G062300.1.p locus=Potri.011G062300 ID=Potri.011G062300.1.v4.1 annot-version=v4.1 ATGTACTGTAATACTAACACACTTCACGGGTGTTCATTCTCTACTTTTTCTTTTCTTTTTGTTCTTTTTAACATGGCAATCTATATACCTCACGAAACTC TCACTACTGAGCCTTCACTTGTGCATGTATTTCTTCACTGTCCTAAGCTGCCTGCATATACAACAATCATGCCTTCTCTTTCTTCTTCTTCTTCTTCTTC CACTTGCACTTTCTTGCTTAGTTTCTTATTTGCTCTAACCGCCTCAAATTGTGCAGCCAGAGAAATCAGCAGTACTAGCAGCCCACGCCAATTATCTGTT GATTACTACGCAAAAACATGCCCTCAACTTGAGCAACTTGTTGGTTCAGTCACTTCCCAGCAGTTCAAAGAAGCACCAGTTTCTGGGCCAGCCACCATTC GCCTATTCTTCCATGACTGCTTTGTACAAGGCTGTGATGCATCAATATTGATATCAACAACGCCTGGAAGTAAAGTGTTGGCAGAGAAGGATGCAGAGGA CAATCAGGACTTAAGGGTAGAGGGATTTCAGACTATAAGCAAGGCCAAGGCCTTGGTGGAGAGCAAGTGCCCTGGTGTTGTTTCTAGTGCAGATATTCTT GCAATTGCAGCCAGAGATTATGTCCACCTTGCAGGAGGTCCTTATTACCAAGTAAAGAAAGGAAGGTGGGATGGAAATATATCAATGGCGTCAAGAGTAC CTTACAACATTCCTAGGGCAAATTTCACAGTTGATCAACAACTAAAACTCTTCAACTCCAAAGGACTGACACTTGAGGACCTCGTTGTTCTTTCTGGTGC TCATACATTTGGATTTGCACACTGTAAGCAATTTGTTAGCCGACTCTACAACTACCGTGGCTCTATGCAGCCTGATCCTGACATGGATCCAAGGCTACTA AAGGCTCTCAGAATGTCCTGCCCACAATTCGGTGGGAATTCAGACACTGTTGCTCCTTTCGATGTGACCACTCCATTCTTGTTTGATCACGCTTATTATG GGAATTTGGAGGCTAAATTGGGCTTGTTGGCCTCAGACCAAGCTCTATTTTTGGACCCAAGAACCAAGCCCTTGGTTCTACAACTAGGAGCGGATAAGCA TAAATTCTTCCAAGCATTTGCAGCAGCCATGGAAAAGATGGGTTCAATAGGAGTGGAAAGGGGAACATGA
AA sequence Show only first row Show all	>Potri.011G062300.1 pacid=42781517 polypeptide=Potri.011G062300.1.p locus=Potri.011G062300 ID=Potri.011G062300.1.v4.1 annot-version=v4.1 MYCNTNTLHGCSFSTFSFLFVLFNMAIYIPHETLTTEPSLVHVFLHCPKLPAYTTIMPSLSSSSSSSTCTFLLSFLFALTASNCAAREISSTSSPRQLSV DYYAKTCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVQGCDASILISTTPGSKVLAEKDAEDNQDLRVEGFQTISKAKALVESKCPGVVSSADIL AIAARDYVHLAGGPYYQVKKGRWDGNISMASRVPYNIPRANFTVDQQLKLFNSKGLTLEDLVVLSGAHTFGFAHCKQFVSRLYNYRGSMQPDPDMDPRLL KALRMSCPQFGGNSDTVAPFDVTTPFLFDHAYYGNLEAKLGLLASDQALFLDPRTKPLVLQLGADKHKFFQAFAAAMEKMGSIGVERGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34060			Peroxidase superfamily protein...		Potri.011G062300 [exp]	0	1
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Potri.018G082600 [exp]	2.23	0.8830
AT3G56750			unknown protein		Potri.006G040400 [exp]	3.60	0.9017
AT5G06940			Leucine-rich repeat receptor-l...		Potri.006G056600 [exp]	9.69	0.8964
AT5G19630			alpha/beta-Hydrolases superfam...		Potri.003G212400 [exp]	12.96	0.8305
AT3G21620			ERD (early-responsive to dehyd...		Potri.002G226800 [exp]	13.26	0.8657
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.011G061300 [exp]	15.96	0.8563	Pt-RAB11.12
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.001G120300 [exp]	16.97	0.8847	SKU5.2
AT3G06840			unknown protein		Potri.001G162100 [exp]	20.39	0.8707
AT4G38650			Glycosyl hydrolase family 10 p...		Potri.004G173300 [exp]	20.49	0.8459
AT1G04040			HAD superfamily, subfamily III...		Potri.002G257700 [exp]	21.00	0.8885

Compare expression of checked genes

Potri.011G062300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.